BAC Information

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BAC

Clone NameMSMg01-326I23
Chromosome1 (Build37)
Map Location 67,518,089 - 67,518,727
singlet/doubletsinglet
Overlap genenone
Upstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326I23.T7 (MSMg01no326_i23.b1)MSMg01-326I23.TJ (MSMg01no326_i23.g1)
ACCAG444151AG444152
length721728
length of high quality
(start - end)
653 (69 - 721)639 (81 - 719)
definitionCHROMAT_FILE: MSMg01no326_i23.b1 PHD_FILE: MSMg01no326_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:17 2005CHROMAT_FILE: MSMg01no326_i23.g1 PHD_FILE: MSMg01no326_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGG
AATTCACAAAAGATGCCCCTTGAACGACCAAGAAGCATTTAAAGATATCT
TTACTGTCCTAAGTCATATGGGAAATACAAATAAAAAAGACCCTGAGATT
CCACATTACAACACATCATAATGATCAAAAGATCAAGTGACAGCATATGC
TGGCAAAGATGTGGAGCAAGGTCAACACTCCTCCATTCCCGGAGGGATTA
CAAATTGGTACAACCATTTTGAAAATGAATTTCTCAGAAAACTGGGAATA
GTTCTAGCTTAATACTCAGACACACCACTCCTGAACATATGCACAAAGAT
GCTCCACCATACTGCAAGGACACATGCTCAACTATGTTCATAGAAGCTTT
ATTTTTAATAAAAATAGAAATGGAAAACATAGATCTCCCTCAACCAATGA
ATAGATAATTAAAATGTGGTATTTTTATATACAACGGAATACTACTCAAC
TATCAAAAACAAGGACATCATGAAATTTTTAGGCAAGTGGATGGAACTAG
ACAATATCCTGAGATAGATAACCAGACTCAGAAGGACATCAATGGTATGT
ACTTACGTATAAGTAGATACTGTCTGTAAAGTACAAAGTAACCAGTCTAC
AATCTACAGAACAAACGATGCTAAATAACAAGTAGATGCAAGGGAAGATG
CTCGAATCTCATTCAGGAGGG
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTTCCTC
ATTTTTAATAGGGTTATTTGATTCTCTGTAGTCTAACTTCTTGAGTTTTT
TTTTTTATATATTGGATATTAGCCTTCTATTGGATGTAGGATTGGTAAAG
ATCTTTTCCCAATCTATTGGTTGCCATTTTGTCCTATTGACAGAGTCCTT
TCTCAATAATATGCTTAAATAATATGATTTGAAAATCATATTCCAAAATA
CCAGCAAGATTTTGCAGATTAATGAATATTGTGAACCAAAATTCCATCTG
AAAGTGTGAAGAGAAGCAAATACAAAAAAAAAATTCAAGCATGTAGTGAG
TAATTGTTTTGGAAAGGAGTTCTTACAACCTCCTAGGATGTAAGAAAATA
CAGTTGATGGAAACAGAAAATTTCAAGGAGATTAGTTATATATTGCAAGT
ATTTATAATCTGATAGTCCCATTATTATAAATAACAAGGACAAATAATAT
TTACAATGTTAAATCATGCTAAGATAATTAGCTAACTTTTAAAATTATTT
TAAATAGGATCCTAACCTCACTTCTCATTATAAAATTAATTTCCAGTGCT
TTGTTATTACAAGTTCTAAAAATAGTTTAGTATTCATTTAATCTCCGAAA
GAGCTAGTAGTTTATTTTGTTAAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_i23.g1 MSMg01no326_i23.g1 CHROMAT_FILE:
MSMg01no326_i23.g1 PHD_FILE: MSMg01no326_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:17 2005
         (639 letters)



>mm_chr1_67517889_67518927
          Length = 1039

 Score = 1236 bits (639), Expect = 0.0
 Identities = 639/639 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgttcctcatttttaatagggttatttgattctctgtagtctaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgttcctcatttttaatagggttatttgattctctgtagtctaacttc 260

                                                                       
Query: 61  ttgagtttttttttttatatattggatattagccttctattggatgtaggattggtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagtttttttttttatatattggatattagccttctattggatgtaggattggtaaag 320

                                                                       
Query: 121 atcttttcccaatctattggttgccattttgtcctattgacagagtcctttctcaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttttcccaatctattggttgccattttgtcctattgacagagtcctttctcaataat 380

                                                                       
Query: 181 atgcttaaataatatgatttgaaaatcatattccaaaataccagcaagattttgcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttaaataatatgatttgaaaatcatattccaaaataccagcaagattttgcagatt 440

                                                                       
Query: 241 aatgaatattgtgaaccaaaattccatctgaaagtgtgaagagaagcaaatacaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaatattgtgaaccaaaattccatctgaaagtgtgaagagaagcaaatacaaaaaaa 500

                                                                       
Query: 301 aaattcaagcatgtagtgagtaattgttttggaaaggagttcttacaacctcctaggatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattcaagcatgtagtgagtaattgttttggaaaggagttcttacaacctcctaggatg 560

                                                                       
Query: 361 taagaaaatacagttgatggaaacagaaaatttcaaggagattagttatatattgcaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagaaaatacagttgatggaaacagaaaatttcaaggagattagttatatattgcaagt 620

                                                                       
Query: 421 atttataatctgatagtcccattattataaataacaaggacaaataatatttacaatgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttataatctgatagtcccattattataaataacaaggacaaataatatttacaatgtt 680

                                                                       
Query: 481 aaatcatgctaagataattagctaacttttaaaattattttaaataggatcctaacctca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatcatgctaagataattagctaacttttaaaattattttaaataggatcctaacctca 740

                                                                       
Query: 541 cttctcattataaaattaatttccagtgctttgttattacaagttctaaaaatagtttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttctcattataaaattaatttccagtgctttgttattacaagttctaaaaatagtttag 800

                                                  
Query: 601 tattcatttaatctccgaaagagctagtagtttattttg 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattcatttaatctccgaaagagctagtagtttattttg 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)