CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCTTTGCTTTCTCACAAGAACAAAGCAGCGCAGTATCAATTATCACC
AAATATTTTATCTTCTCTGTTAAAAACTGGCTAATCATTATCATGCAAGA
TCACTTCTGTGTTTGATAGTATTTACTGTGCATCAGCTCTAGGGAAGCCC
GTGTAAATCATCACAGGTGACACAGGGAAAAAGAGAAAACCGTTCTAGTT
CACTAAAGTATAACTTTCAAAGAGAAAAAGAAACAAAGTTTTCTAGGGCA
ATAAATTCTAGGTCATCATTAATCTGAGATGTCACAAAATTTATACTATC
ATTTATGCGTGGACATGCTTTTGTGTTTGTGATTAAAGTAACATTATATA
TTTATATGTGTTTATATAATTAAAATGTATAGTTACATAGTTTTAAATCA
CTTACATTTTCTTTTATTTTTATTCATAATCTATATATTATCATTATTAT
ATTATTGTATAGATCATACAAATATAAATACATATTCAGTGACTAATTAC
AACTTCATGTTTCTCCACCCAGATATTCCCATGTATTACCCTGCCCATAC
TCTCAAAGCATGACCTTGATTTCTTGATTCATTATAGTATACACATATAT
ATTCAGATATATATTCAGCTTTGTATCCTGATTAAGCCATATAATGTTAC
TTATATATGTTACTTATACTTATTGGGTAGCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGAGCAGAAGGAGACAGAAG
CAAGAAAGTCAGACATAATGGAATAATTATGCACACCAAGGTCAACTGCA
AAGCAGTCACACACAAATGAAATCTATACAGCCATTGTCCAGGGCTAAGG
TTAGAAAAAAATAGGAACAAAACTGCTTTTTACAAAGAGCTGCTGCAGGC
TACTGAGATGTCTCCATCCTGACCTACTGCAGGCAGTCCCTTATTTCAGA
TCCAGGTCCCCTGGAGGAATGGGTCTTCTGCTTCTCAGGGTCCCAGACAC
CATCCTTTTCTACAAGGAGCTGCCGCAGGCTTCTGAGATGTCTGCATCCT
GGCCTACTGCAGGCACCCCCTGTCATTGTATGCTGTCCCCAACAGAGACA
GAATGTCAGAAATGAGAGAGAGAGAGCACACACACACATGAAGTTGTAAG
GTGAAAGTAGTGGAGGGTAGCCAGTTTTGTTGGTGGTACATACCTATCAC
TCTAATATTTAACAGACACAGAAGCATATCTCTGTGATTTGGAAGCCATC
CTGGTCTAAATAGTGAGTTCTATCCTGATTCATATACTAAGTTCCAGACT
AACCAGAGATATAAAGACAGACACTGTCTTCAATCTATAAAGATTTCATA
ACAAAGTTTGATCTGTCATAGAAGTGAGGTAGA

Query= MSMg01no326_o12.b1 MSMg01no326_o12.b1 CHROMAT_FILE:
MSMg01no326_o12.b1 PHD_FILE: MSMg01no326_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:41 2005
         (684 letters)



>mm_chr1_29119622_29120705
          Length = 1084

 Score = 1093 bits (565), Expect = 0.0
 Identities = 606/621 (97%), Gaps = 5/621 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctttgctttctc-acaagaacaaagcagcgcagtatcaattatcaccaaatatt 65
           ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 ggaattctttgcttt-tcaacaagaacaaagcagcgcagtatcaatcatcaccaaatatt 561

                                                                       
Query: 66  ttatcttctctgttaaaaactggctaatcattatcatgcaagatcacttctgtgtttgat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatcttctctgttaaaaactggctaatcattatcatgcaagatcacttctgtgtttgat 501

                                                                       
Query: 126 agtatttactgtgcatcagctctagggaagcccgtgtaaatcatcacaggtgacacaggg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtatttactgtgcatcagctctagggaagcccgtgtaaatcatcacaggtgacacaggg 441

                                                                       
Query: 186 aaaaagagaaaaccgttctagttcactaaagtataactttcaaagagaaaaagaaacaaa 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 aaaaagagaaaaccgttctagttcactaaagtataactttcaaagagaaaaagaaacata 381

                                                                       
Query: 246 gttttctagggcaataaattctaggtcatcattaatctgagatgtcacaaaatttatact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttttctagggcaataaattctaggtcatcattaatctgagatgtcacaaaatttatact 321

                                                                       
Query: 306 atcatttatgcgtggacatgcttttgtgtttgtgattaaagtaacattatatatttatat 365
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 atcatttatgagtggacatgcttttgtgtttgtgagtaaagtaacattatatatttatat 261

                                                                       
Query: 366 gtgtttatataattaaaatgtatagttacatagttttaaatcacttacattttcttttat 425
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| 
Sbjct: 260 gtgtttatataattaaaatgtatagttatgtagttttaaatcacttacattttcttttaa 201

                                                                       
Query: 426 ttttattcataatctatatattatcattattatattattgtatagatcatacaaatataa 485
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 200 ttttattcataatctatatattat---tattatattattgtatagatcatacaaatataa 144

                                                                       
Query: 486 atacatattcagtgactaattacaacttcatgtttctccacccagatattcccatgtatt 545
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 143 ataaatattcagtgactaattacagcttcatgtttctccacccagatattcccatgtatt 84

                                                                       
Query: 546 accctgcccatactctcaaagcatgaccttgatttcttgattcattatagtatacacata 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  accctgcccatactctcaaagcatgaccttgatttcttgattcattatagtatacacata 24

                                
Query: 606 tatattcagatatatattcag 626
           ||||||||||||| |||||||
Sbjct: 23  tatattcagatatgtattcag 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)