BAC Information

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BAC

Clone NameMSMg01-326P24
Chromosome1 (Build37)
Map Location 163,749,091 - 163,749,766
singlet/doubletsinglet
Overlap geneAI848100
Upstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl
Downstream geneEG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P24.T7 (MSMg01no326_p24.b1)MSMg01-326P24.TJ (MSMg01no326_p24.g1)
ACCAG444474AG444475
length749748
length of high quality
(start - end)
692 (46 - 737)676 (73 - 748)
definitionCHROMAT_FILE: MSMg01no326_p24.b1 PHD_FILE: MSMg01no326_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005CHROMAT_FILE: MSMg01no326_p24.g1 PHD_FILE: MSMg01no326_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTAACAATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCGTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTCACAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTATGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATACGTGGATATTAGCCCAAAACC
TAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGANACTCAAG
AAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCGTAGAAGTGGGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTAAAGAAATACTTATGAGGCCTGCAA
AACCTTAAATATTATCCAACCCTTTAAAGAAAAAAAATGTGCAGATACTT
GGATGATAGTCATTATTTACTGAGCTGCTCATGCATGCCAGGCACAGTTC
AAGCACTGTTTATATAATCCTCTTACAACCTAGCAGTGGTAATATCTCTT
TTTAAAAAATGAAGACACAGACAGAGTCTGTACTTAGATGTCCCAGCAGA
TAGTAGGCACTGCTGTGTATCTTCCTAGGATTCCCCCCCCCTTTGCCTAT
AAAGTCTGATTTTCTTTTTTACCTCTCAAGTTACATAATATTTATTTTGA
CTAGCAGTAATTGTCTGCACCAGAATTTCAGATTAGTGCAAAGTAGCATT
GGATTTAATCCTAACTTCAGTATTTACTATTTTGTAATTTAGGTAGTAAG
CCAAATCTCTAAAGTTTGATTTTTTTTTTTCATGTAGGAGCCAAGGGCAA
ACAAACCTCTCAGGGTTAACATATATGAAAGTAACCAGTATAACATCTGA
CACATAGAGGTATTCAGATATTAGCTGTCTCTACTTAACTCTATATGCAC
AAGTTGCTATAACTTGAGTTGAGTAGCATTTACAAAGGGGATGTCAGAGA
TACTATCTATTCACAGCAAAATGTGTGCGTGTGTGTGTGTGTGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p24.g1 MSMg01no326_p24.g1 CHROMAT_FILE:
MSMg01no326_p24.g1 PHD_FILE: MSMg01no326_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:48 2005
         (676 letters)



>mm_chr1_163748710_163749791
          Length = 1082

 Score = 1207 bits (624), Expect = 0.0
 Identities = 661/676 (97%), Gaps = 7/676 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttaaagaaatacttatgaggcctgcaaaaccttaaatattatccaaccctttaaagaaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttaaagaaatacttatgaggcctgcaaaaccttaaatattatccaaccctttaaagaaa 998

                                                                        
Query: 61   aaaaatgtgcagatacttggatgatagtcattatttactgagctgctcatgcatgccagg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  aaaaatgtgcagatacttggatgatagtcattatttactgagctgctcatgcatgccagg 938

                                                                        
Query: 121  cacagttcaagcactgtttatataatcctcttacaacctagcagtggtaat-atctcttt 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 937  cacagttcaagcactgtttatataatcctcttacaacctagcagtggtaataatctcttt 878

                                                                        
Query: 180  ttaaaaaatgaagacacagacagagtctgtacttagatgtcccagcagatagtaggcact 239
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  ttaaaaaatgaagactcagacagagtctgtacttagatgtcccagcagatagtaggcact 818

                                                                        
Query: 240  gctgtgtatcttcctaggatt---ccccccccctttgcctataaagtctgattttctttt 296
            |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 817  gctgtgtatcttcctaggattcccccccccccctttgcctataaagtctgattttctttt 758

                                                                        
Query: 297  ttacctctcaagttacataatatttattttgactagcagtaattgtctgcaccagaattt 356
            ||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||
Sbjct: 757  ttacctctcaatttacataatatttattttgactagcagtaattgtctgtagtagaattt 698

                                                                        
Query: 357  cagattagtgcaaagtagcattggatttaatcctaacttcagtatttactattttgtaat 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  cagattagtgcaaagtagcattggatttaatcctaacttcagtatttactattttgtaat 638

                                                                        
Query: 417  ttaggtagtaagccaaatctctaaagtttga---tttttttttttcatgtaggagccaag 473
            |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 637  ttaggtagtaagccaaatctctaaagtttgattttttttttttttcatgtaggagccaag 578

                                                                        
Query: 474  ggcaaacaaacctctcagggttaacatatatgaaagtaaccagtataacatctgacacat 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  ggcaaacaaacctctcagggttaacatatatgaaagtaaccagtataacatctgacacat 518

                                                                        
Query: 534  agaggtattcagatattagctgtctctacttaactctatatgcacaagttgctataactt 593
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517  agaggtatttagatattagctgtctctacttaactctatatgcacaagttgctataactt 458

                                                                        
Query: 594  gagttgagtagcatttacaaaggggatgtcagagatactatctattcacagcaaaatgtg 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 457  gagttgagtagcatttacaaaggggatgtcagagatactatctattcacagcagaatgtg 398

                            
Query: 654  tgcgtgtgtgtgtgtg 669
            || |||||||||||||
Sbjct: 397  tgtgtgtgtgtgtgtg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1082
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1072
Effective search space:   713952
Effective search space used:   713952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)