AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAA
TTCCAAACCAAATACCCTTTGCTGTGACGGATACCAACACGGGGATGGTA
TTTCTTTTATACAGAGAGATTTTCCAATGACCATACTAAGATAGCTGTGA
ATCTCAACTAAAACCTAAGCCAGGTATGACTTTTGTCCTTTCGCCGCCGT
AAAGCTAGGAATTTCGCAAGAAATCCCATTTAATTAAAAGACATGCCTTA
CCTCTCATGCGGAACCCTTGTGGCTCACAATTTTATCTTACTGGATTTTG
ATGCTAACTAAGCAAGGGAACTTCGGAGCCACCCTGCAATCTCACCACAA
AGGAGGGGGGAAGCAACTGAAGTGCCTTGACAACGCTTTCAGGAGCAGCG
TGAGAGCCACCAAGACGGTACCCACAGCTGATAAGATGCTTCAGCTAGGT
CCCACTTGCCCCTGAAGAGACACAGTCATGCTCTCTGCGGTGTCTTATTT
CACAGACGCTCCTCACCTGATAAAGGCTGAGAGATGGACTGCGCTGGGAG
GAGGCGGGAACTGCCGGTGCCGGGGCATCATGGGTAATGAAAGCATCTAT
GTGGTCCTCTGTCCTGAGAGCTCTAGATGACCCTCGGAATCCTCTCGGAT
TTCCAGTTCCTTGTGATTTGACACTACCAATTCAAACTGCAGTATGCACT
CAGGACCAGGATGTCCTCGGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCAGAAAATCCAATTTTCCTACCTCCATTTCCCAAGTGCTGAG
ATTACAGATGTGCACCACCACACGGGACTTGTAGGTTGGTCTTGAACGCT
GTAGTATACCTCCACCTCTAAATTGTAATCATGTCTGGTAGTGGTCACTA
ATTGTCATTAGAATTAAACTTTTGTTGTTGTTTTTAGATAAGTCCTCACT
CTGTATCACTAGCAGGCAGGCAACTCACCATGTAGGCCAGAAAAAAGAAT
CTCTTATCTCTGTCTCTGTGTCTACATATCTATTTGGCTGGGCACAGTAG
TATGTACCTGTAATTCAGCGCTCATGTGGCTGAGGCAGGAGGATTGAAAG
CTATGAATGTACACCACCGTAAAATACTCACCATTCAGACCCTTTATTAG
GAGTAGACCATACTGGGTAAATGGTTCACAACTACTCGACTGAAGAGATA
GCTGAGAGCTCACATCTCCAGTGTTCCTTTATATCGCATACATATTCTTC
CTTTTATATATTTCTGTAATAGTATCAGTCTACAAGATTTACAAACGACC
ACTTAGCTGATAAGTAGCAAATGTACTTGATACAGTTCTGTAGGTTAGGT
CTATTGAGATAACCAGGATAGTTGATCCCTATGGGCTTCATTTGACTGAT
CCCGTGTATATTTG

Query= MSMg01no327_b11.b1 MSMg01no327_b11.b1 CHROMAT_FILE:
MSMg01no327_b11.b1 PHD_FILE: MSMg01no327_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:55 2005
         (503 letters)



>mm_chr1_158677507_158678405
          Length = 899

 Score =  853 bits (441), Expect = 0.0
 Identities = 480/501 (95%), Gaps = 15/501 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccaaaccaaataccctttgctgtgacggataccaacacggggatggtatttcttt 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattccaaaccaaatagcatttgctgtgacggataccaacacggggatggtatttcttt 471

                                                                       
Query: 64  tatacagagagattttccaatgaccatactaagatagctgtgaatctcaactaaaaccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tatacagagagattttccaatgaccatactaagatagctgtgaatctcaactaaaaccta 411

                                                                       
Query: 124 agccaggtatgacttttgtcctttcgccgccgtaaagctaggaatttcgcaagaaatccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agccaggtatgacttttgtcctttcgccgccgtaaagctaggaatttcgcaagaaatccc 351

                                                                       
Query: 184 atttaattaaaagacatgccttacctctcatgcggaacccttgtggctcacaattttatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atttaattaaaagacatgccttacctctcatgcggaacccttgtggctcacaattttatc 291

                                                                       
Query: 244 ttactggattttgatgctaactaagcaagggaacttcggagccaccctgcaatctcacca 303
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttactggattttgatgctaa----gcaagggaacttcggagccaccctgcaatctcacca 235

                                                                       
Query: 304 caaaggaggggggaagcaactgaagtgccttgacaacgctttcaggagcagcgtgagagc 363
           |||||||||||||||||||||||||||||||          |||||||||||||||||||
Sbjct: 234 caaaggaggggggaagcaactgaagtgcctt----------tcaggagcagcgtgagagc 185

                                                                       
Query: 364 caccaagacggtacccacagctgataagatgcttcagctaggtcccacttgcccctgaag 423
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caccaagacggtacctatagctgataagatgcttcagctaggtcccacttgcccctgaag 125

                                                                       
Query: 424 agacacagtcatgctctctgcggtgtcttatttcacagacgctcctcacctgataaaggc 483
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 124 agacacagtcatgctctctgcggtgtcttatttcacagacactcctcacctgagaaaggc 65

                                
Query: 484 tgaga-gatggactgcgctgg 503
           ||||| |||||||||||||||
Sbjct: 64  tgagaagatggactgcgctgg 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space:   438277
Effective search space used:   438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_b11.g1 MSMg01no327_b11.g1 CHROMAT_FILE:
MSMg01no327_b11.g1 PHD_FILE: MSMg01no327_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:55 2005
         (347 letters)



>mm_chr1_158493550_158494296
          Length = 747

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattttcctacctccatttcccaagtgctgagattacagatgtgcaccaccacacggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 caattttcctacctccatttcccaagtgctgagattacagatgtgcaccaccacatggga 260

                                                                       
Query: 61  cttgtaggttggtcttgaacgctgtagtatacctccacctctaaattgtaatcatgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtaggttggtcttgaacgctgtagtatacctccacctctaaattgtaatcatgtctg 320

                                                                       
Query: 121 gtagtggtcactaattgtcattagaattaaacttttgttgttgtttttagataagtcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagtggtcactaattgtcattagaattaaacttttgttgttgtttttagataagtcctc 380

                                                                       
Query: 181 actctgtatcactagcaggcaggcaactcaccatgtaggccagaaaaaagaatctcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctgtatcactagcaggcaggcaactcaccatgtaggccagaaaaaagaatctcttat 440

                                                                       
Query: 241 ctctgtctctgtgtctacatatctatttggctgggcacagtagtatgtacctgtaattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgtctctgtgtctacatatctatttggctgggcacagtagtatgtacctgtaattca 500

                                                       
Query: 301 gcgctcatgtggctgaggcaggaggattgaaagctatgaatgta 344
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgctcaggtggctgaggcaggaggattgaaagctatgaatgta 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)