TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTTAGAGCACCCATGAATAAATAAGCTGCTACAGAATCACTTGATTG
CATTGTCAATGATCTTTCTTGTCAGAATATGACAATGTAATGAGGTAAAG
GTAAGATGTACTTTGTTTAAAAAGAATATTAAAATGTCTTAGCATACTAT
CAATGTAATGTACAGTGTTAATCTATGTTTACTTTGAAAGCTTCTGCTAT
TGTTCATGTAGATTATCTCAGAATATCATTTCAACTGTAAAATTATTTAG
ATTAAATAAGTCTGTGGTTTTTCATTGCAGGTGGTCACATATGTGTGTAT
TTTGGTGGCTACTTGCTTTAGGAAGACTCAGTCCACTGTCAGTGACAGTA
TTACTTGTACAGTGTTTCCCCCGCTACATGAGAAAGGGGCAAACTATCTA
AAGCCAAACCACATAGATTGAATATATTCATTTCTCTCTGCCATTGACTA
TAGTTTTGATGTCATTGGCTGCTTTAGTTCCTCTTTTGACTTTTGTAATT
TCAGTGATTAACTTAAGCCTCTAATTATAAAGTAAATAAACTCTTTCCTC
TTACAAGATGTTCTTGGTTAGGATGTTTGCCACAGCTACAACATCAAAAT
AGAACAGTTACCATATAATACATACCATTTAGCATTTTGTTTTCCTAACT
TAAACTACATTAAAAACTTTTAATTTCGTGCCTTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAATAATTATAAAACTGAGAGAGCTTTAA
TATCTTCAATAGATAAAGAACTAAAAAAACCAGAACATCAAGAAAACAAA
TAACAGATTAAAGTGGGTTATTGAACTAAACAGAGTTCTAAAAATATGAA
ACTCAAATGTTTGAGAAACACTATAAAATAGTTCAAAATCCTTAGTGATC
ACAGAAATGAAAATTAGAACTATATTGCAAGTTCATCTTGGGCCAGTCAA
AATTACTAAGATCATTAACAGCCCAGGCTAGCAAGTTTATGGGGAAATGA
GAACACTTATTCATTGCTGGCAGGAATGCAAACTTGTTTAGTCACTATGG
AAATAAGTTAGAGCTTCCTCAAAATCTGAAAATTAACCTACCTCAAGATA
CAACTATTACCACTCTTGGATTTATACCAAAAGGATTCTACATCTTATGT
GTAGAGATATTTGTTCAGCCATGTATTGCTGCTTTATTCATAGTAGCCAA
AATTTGGAAACAAGCTAGGTATCTATCAACTGTGAATGGGTAAAGAAAAC
ATAGTATCTGTATACAATTGCATATTATTCTGCTGTTAGGAAAATTATAT
TATGTTTGAAGATAAATGAATGAAGCTAGAAACAATCACCTTAACTAAAA
ATACCCAGACTCACAAAGACCAATACCCC

Query= MSMg01no327_e18.b1 MSMg01no327_e18.b1 CHROMAT_FILE:
MSMg01no327_e18.b1 PHD_FILE: MSMg01no327_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:10 2005
         (597 letters)



>mm_chr1_144500060_144501054
          Length = 995

 Score = 1085 bits (561), Expect = 0.0
 Identities = 585/593 (98%), Gaps = 2/593 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttagagcacccatgaataaataagctgctacagaatcacttgattgcattg 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gaatt-tttttagagcacccatgaataaataagctgctacagaatcacttgattgcattg 737

                                                                       
Query: 65  tcaatgatctttcttgtcagaatatgacaatgtaatgaggtaaaggtaagatgtactttg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcaatgatcttacttgtcagaatatgacaatgtaatgaggtaaaggtaagatgtactttg 677

                                                                       
Query: 125 tttaaaaagaatattaaaatgtcttagcatactatcaatgtaatgtacagtgttaatcta 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttaaaaagagtattaaaatgtcttagcatactatcaatgtaatgtacagtgttaatcta 617

                                                                       
Query: 185 tgtttactttgaaagcttctgctattgttcatgtagattatctcagaatatcatttcaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtttactttgaaagcttctgctattgttcatgtagattatctcagaatatcatttcaac 557

                                                                       
Query: 245 tgtaaaattatttagattaaataagtctgtggtttttcattgcaggtggtcacatatgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtaaaattatttagattaaataagtctgtggtttttcattgcaggtggtcacatatgtg 497

                                                                       
Query: 305 tgtattttggtggctacttgctttaggaagactcagtccactgtcagtgacagtattact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgtattttggtggctacttgctttaggaagactcagtccactgtcagtgacagtattact 437

                                                                       
Query: 365 tgtacagtgtttcccccgctacatgagaaaggggcaaactatctaaagccaaaccacata 424
           ||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 436 tgtacagtgtttccaaagctacatgagaaaggggcaaactatctgaagccaaaccacata 377

                                                                       
Query: 425 gattgaatatattcatttctctctgccattgactatagttttgatgtcattggctgcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gattgaatatattcatttctctctgccattgactatagttttgatgtcattggctgcttt 317

                                                                       
Query: 485 agttcctcttttgacttttgtaatttcagtgattaacttaagcctctaattataaagtaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agttcctcttttgacttttgtaatttcagtgattaacttaagcctctaattataaagtaa 257

                                                                
Query: 545 ataaactctttcctcttacaagatgttcttggttaggatgtttgccacagcta 597
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 ataaactctttcctcttacaagatgttcttggttagga-gtttgccacagcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space:   578195
Effective search space used:   578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)