BAC Information

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BAC

Clone NameMSMg01-327G10
Chromosome1 (Build37)
Map Location 45,146,320 - 45,146,678
singlet/doubletsinglet
Overlap genenone
Upstream gene1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
Downstream geneLOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327G10.T7 (MSMg01no327_g10.b1)MSMg01-327G10.TJ (MSMg01no327_g10.g1)
ACCAG444769AG444770
length746716
length of high quality
(start - end)
366 (44 - 409)341 (75 - 415)
definitionCHROMAT_FILE: MSMg01no327_g10.b1 PHD_FILE: MSMg01no327_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:18 2005CHROMAT_FILE: MSMg01no327_g10.g1 PHD_FILE: MSMg01no327_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCAACTGTATATCCATACCATAAAGATGAGCAGGAACCTGAAAGAA
AATTAAATTCAAGATCTGTGACTCATGCGGCTTGCTAGTTAGAAGGGCTT
TTTGGACCTAGGGCAAAGAACTAAGGCTGTTGCTCTTAAGTCATTCCAGG
AACTGTCTAGCCATATAGATAGGAGAGACCTACAAGGACATCCAGACTAT
CTCAGGAAGGATGTCTGGACTATCTCAGCTGAGTCATAAACACCTGCCCT
TTAGTATTGCTGTTACCTTGCACTGTATGTACAATTTACTGATGTTTAAA
CTCTCCTGTTGTGTGTAACCATGCCAATTCTTCCCCTGCACCCAACTTTT
TTGTATATAAATCCCTATTTCACACCCCCCCCGGTTGACCCCTCTGTCTC
CTCTGTGAGATATGTGTTGTCCCAGAGCTCTGTCTTTAAACTACCTTGTG
TGCCCGCATCAAGATGGCCTCTGGTTTTCCCTTGTTCGTGTGCCGTCTCG
GTATCTGTGTCGCCAGTCCCCCTCCCTACCCCCTTCCTTTCGTATTCCCC
TCGTATATTTTTTTGATCCTTACCAACCTTCTCATAACCTTTGTTATTTA
CTTTTCCGCTCCACCATCCCTTTGCCGGTTCCGTATTCCTTCTCCACCTT
CGTTCACTTATCTTTCCCCCAATGCTTCCTTTCTTCTCTGCTTCTC
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATGGGGGCATGTAGGAAGGAGTTA
GAATGAGTAGGTGGTGTAAAAACTGTAATCAAAATATGTTGTATAAGAAA
AGAATATATTTTAATAAAAGGGAGAAGATATGTTTTAATGTAAACAATAT
TTTGTATTATAATTAAATTTATTTTGTATTTTGATGTCACATAATACTCT
TTGTGCTGATATGTAAATAAGTAAATAAATAAAATTTCATGGACCTTACA
TAAGATAATTAATAATATCCAGATTTTATTTATTATTAAAATATCAGATC
TCTGACAGAAGTCTAAATGCAATATAATGATGAAATTTGATTACCCTTAA
TATTATTTAGATTCTTGTGTCCCACCCCCGCAGAGNATTACATATTTTAA
AATATTTTAATCAGTGATATGGACTTATCATACATAACTGTTATTGATAA
TAATAATCACAAATAATTTTGTTCATGATACAGGACAAAATATATTTTAT
TAATACTTTGCATGCTCGATTTACAGTCTTTAAGCGTCTATAATTATGCT
ATGCCTTGCTTGTCTCTGATCATTCTTTGTCCTGACATTTCACCAATCGA
ACAAATGAATATTTTAGCTTTTATTTAAGCTTATTTCTCCATTGCACTCT
TCTTTTTTTTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_g10.b1 MSMg01no327_g10.b1 CHROMAT_FILE:
MSMg01no327_g10.b1 PHD_FILE: MSMg01no327_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:18 2005
         (366 letters)



>mm_chr1_45146113_45146878
          Length = 766

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaactgtatatccataccataaagatgagcaggaacctgaaagaaaattaaattc 67
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaactgtaaatcaataccataaagatgagcaggaacctgaaagaaaattaaattc 267

                                                                       
Query: 68  aagatctgtgactcatgcggcttgctagttagaagggctttttggacctagggcaaagaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagatctgtgactcatgcggcttgctagttagaagggctttttggacctagggcaaagaa 327

                                                                       
Query: 128 ctaaggctgttgctcttaagtcattccaggaactgtctagccatatagataggagagacc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctaaggctgttgctcttaagtcattccaggaactgtctagccatatagataggagagacc 387

                                                                       
Query: 188 tacaaggacatccagactatctcaggaaggatgtctggactatctcagctgagtcataaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacaaggacatccagactatctcaggaaggatgtctggactatctcagctgagtcataaa 447

                                                                       
Query: 248 cacctgccctttagtattgctgttaccttgcactgtatgtacaatttactgatgtttaaa 307
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 448 cacctgccctttagtattgctgtttccttgctctgtatgtacaatttactgatgtttaaa 507

                                                                      
Query: 308 ctctcctgttgtgtgtaaccatgccaattcttcccctgcacccaacttttttgtatata 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctctcctgttgtgtgtaaccatgccaattcttcccctgcacccaacttttttgtatata 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)