BAC Information

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BAC

Clone NameMSMg01-327L14
Chromosome1 (Build37)
Map Location 136,152,429 - 136,322,765
singlet/doubletdoublet
Overlap geneMyog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
Downstream geneKlhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327L14.T7 (MSMg01no327_l14.b1)MSMg01-327L14.TJ (MSMg01no327_l14.g1)
ACCAG445008AG445009
length762808
length of high quality
(start - end)
372 (46 - 417)250 (75 - 324)
definitionCHROMAT_FILE: MSMg01no327_l14.b1 PHD_FILE: MSMg01no327_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:41 2005CHROMAT_FILE: MSMg01no327_l14.g1 PHD_FILE: MSMg01no327_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,322,399 - 136,322,765)(136,152,429 - 136,152,678)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCG
GAATTCCAGCAGCTCCAACTGCCTGCTCAGCCCTGGGACAAGATGTGACA
ATAACACACATGGTCTCTTGCTGTGGCTGGCCTTTCAACTTACTTGGAAA
AAGTCCGAGAGACCTTCTCTGAATGACAGTAGACAGTGTGGAAGAGCCAG
GAGAAACTGAGGCAGAGCACCGCGCCCAGGAAGAACATCCCGAAGACCAC
CTTCTCCTGCAGGGGAGCCATGAAGTACATATTTGGTCTCAGCATCGTCA
AGATTCCCAGAAAGAGAAATAGCACTAAACCTGCACGAGACAAAAAGGAA
AAACCACCCGTGAGGAAATCTGGACTACACACACCGAGGCAGCCACTGTT
TCTATCAGTAAACAGGGCCAACCACCTCATGCGAACTGCCATCAGCCAGC
CAGACAAACCAAGACAGACACTTTTATCTTATTATCTCTTAAATAATTTA
CTTATTTTTATTTTATGTGTATCAGTGTTTTGTCTGCGTATGTGTCTGTG
TGAGGATGTGTGAATGCCACGTGTCTGCCGGCAGCTGAACCTGTATCCTC
TGTTATAACCACGATTTTTTCAACTACTGTATCTATCTCTCCATCTCTGA
CCTTTTTATTTTGCGATAGGCTTTCCTGTACCCCTTGACCGTTTCGCTCT
TTCCCTTGTAATTATCTTATCCCCTGATAACTATCAACTTCCCTGTCACA
TACTTTCTGTAT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATTCCTGTGATCCCGGGCTTGCAG
CACCCACAGGTGTCTGACAATATCAACAAAAGACACTCAGGGAGCAAAAG
AAATCCCCTTCAGATACAGTGCCAAGAACCATGAGGATGTGATCCAGCTG
CCTGTCATTGTTACAACGTAAAAAGAGGAGGTGTTTATTTTCGCTCATGT
TTTCAGAGATTTGAGGCCGTGTATGCTCAGCCTGCTCACTTTGGAGTTGC
GACCTGGGACGAAGAGTGTGGTGCATTGTGGTACAGTGTGCTGAGGCAAA
GCTCTTTATCACATGGTACCCTGTGAGCAAAGGACAAAGGAGCCAGGATC
TTAGGATCTTAATGTTTTTCCAACCCCCTTTGTATAATTTCAAAAGTTTA
ATTTCTTCTATTATGTCCTGCTCTAAAAGGCTCATCTACATCCCCCATAT
CATCATTATTTCTGATACTCAAACTTCGACTATATCGAGTCCTTTTATGT
GTAATTCTTTTAATATTACAACCTCTTTATTCACTGAGTTTTAATGTTAT
ATGTATATCTATACTTCTTTCCTTCAGGATTCTTGTCTGAACTTCCTTCT
CCCGCTTTACTTTTGTAACGAGACTTCTTTTTCATGGGACCTCTCTCTTC
TCATTCCCTTCTTAATTGCGTACCATTTTTTTTATAAGTATTTCTCCATG
TAACGTCTTTCTTCTGCAAAATTACGGGAACTTCCCTTTTTTATACAGGC
GACGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_l14.b1 MSMg01no327_l14.b1 CHROMAT_FILE:
MSMg01no327_l14.b1 PHD_FILE: MSMg01no327_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:41 2005
         (372 letters)



>mm_chr1_136322194_136322965
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccagcagctccaactgcctgctcagccctgggacaagatgtgacaataacacaca 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattccagcagctccaagtgcctgctcagccctgggacaagatgtgacaataacacaca 513

                                                                       
Query: 66  tggtctcttgctgtggctggcctttcaacttacttggaaaaagtccgagagaccttctct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tggtctcttgctgtggctggcctttcaacttacttggaaaaagtccgagagaccttctct 453

                                                                       
Query: 126 gaatgacagtagacagtgtggaagagccaggagaaactgaggcagagcaccgcgcccagg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaatgacagtagacagtgtggaagagccaggagaaactgaggcagagcaccgcgcccagg 393

                                                                       
Query: 186 aagaacatcccgaagaccaccttctcctgcaggggagccatgaagtacatatttggtctc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagaacatcccgaagaccaccttctcctgcaggggagccatgaagtacatatttggtctc 333

                                                                       
Query: 246 agcatcgtcaagattcccagaaagagaaatagcactaaacctgcacgagacaaaaaggaa 305
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332 agcatcgtcaagattcccagaaagagaaatagcacaaaacctgcacgagacaaaaaggaa 273

                                                                       
Query: 306 aaaccacccgtgaggaaatctggactacacacaccgaggcagccactgtttctatcagta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaccacccgtgaggaaatctggactacacacaccgaggcagccactgtttctatcagta 213

                  
Query: 366 aacaggg 372
           |||||||
Sbjct: 212 aacaggg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_l14.g1 MSMg01no327_l14.g1 CHROMAT_FILE:
MSMg01no327_l14.g1 PHD_FILE: MSMg01no327_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:41 2005
         (250 letters)



>mm_chr1_136152229_136152878
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattcctgtgatcccgggcttgcagcacccacaggtgtctgacaatatcaacaaaagac 60
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattcctgtgatcccgggctcacagcacccacaggtgtctgacaatatcaacaaaagac 260

                                                                       
Query: 61  actcagggagcaaaagaaatccccttcagatacagtgccaagaaccatgaggatgtgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagggagcaaaagaaatccccttcagatacagtgccaagaaccatgaggatgtgatc 320

                                                                       
Query: 121 cagctgcctgtcattgttacaacgtaaaaagaggaggtgtttattttcgctcatgttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctgcctgtcattgttacaacgtaaaaagaggaggtgtttattttcgctcatgttttc 380

                                                                       
Query: 181 agagatttgaggccgtgtatgctcagcctgctcactttggagttgcgacctgggacgaag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agagatttgaggccgtgtatgctcagcctgctcactttggagttgcaacctgggacgaag 440

                     
Query: 241 agtgtggtgc 250
           ||||||||||
Sbjct: 441 agtgtggtgc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)