BAC Information

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BAC

Clone NameMSMg01-327O11
Chromosome1 (Build37)
Map Location 16,655,833 - 16,656,110
singlet/doubletsinglet
Overlap geneTmem70
Upstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480
Downstream geneLy96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327O11.T7 (MSMg01no327_o11.b1)MSMg01-327O11.TJ (MSMg01no327_o11.g1)
ACCAG445140AG445141
length737813
length of high quality
(start - end)
394 (45 - 438)278 (81 - 358)
definitionCHROMAT_FILE: MSMg01no327_o11.b1 PHD_FILE: MSMg01no327_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:53 2005CHROMAT_FILE: MSMg01no327_o11.g1 PHD_FILE: MSMg01no327_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCCGC
GGAATTCTGAGTATCTCCCCTTTGGCTTTGCTGGGATTCTTATGCCCATG
AATTAATAGACAGATGAAGGTAGTCGTTCTGCTGGCAGGGTGATTGAGCT
CAATTACCAGGAGGAAATCAGATTGTGCTACACAATGGGAACTGACCATG
CCTGAAAGACAGAGGTTCACTAGGACCCTCTAAAACCCTCCTGTGCAGTA
GCCCAGGTCAAAAGAACACTGCAACCCAATTAGAATAAAATACCCAAGGA
CTCAGGTCCCACCAGAAAAAGAATGTTTGGGTCCTTTTCTCAGGTAAAAC
ATTCTGCTTGAGTCCATAACTTAATTCAGGCTGCTATATAATGGACACCA
ACACCCAGCTGCCTTACACCCCGAGCTGCTCTACTCACAGAGCTAGTAAT
CTGGTAAGCTTGGATATCTAGCATCAGTATACTTGTCTTCTAGAAGACTT
CTGGTGTATCATCATGTACAGAAAAATGGAGCTGAAATACTCTCCTTCAT
CACTCTGAACAATGGCAATAACACCATTTCTAAAGATGCCAGAGCCTCAC
CCAATCCTAATTACTTCTCAAAGGCTCCACCTCCTAATATCACGTGGGAG
TAGGGATTCAACACACAGTCTTGGAGCGGTGTCGGGGGGGACTATCATTT
GGCCTTAATCATCAGGGATACTGCCCGCACAATTTGA
NACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATATAGACCCGGTTGTCC
TCGAAATCAGAGACTCGCCTACCTATTGACTTCCCATTCTAGGATTAAAG
ATTTGCTCTGCTGCGCAGGGACTTATTTCTTACTCTAGAGCTAAAGGTCA
GAAGGGCGCTAAATGCTAAGAAATTGATGCAGCACGTGGAGCTAGCCTCC
TAAGTTGTGTTACTTGTCCGTTTTTAGGAATTTCTTTGATTACAGAGTGA
AAGGTGGGGTGTGGATGTTATCTTACAAAGTAGGTAGTATGTTAAACTAT
ACTATAAAATGTAATAATTTTGTGCGCTCTCGAGACAGGGTTTCTTATGT
GTTATCCTTGGCTAATTTGCCCCCCCCCCCACGGGAAGAATATAGCTGGG
TGTTTTGCATTCTTCTAAGATTTTCTTTGTTCCCCGCACCCCCGTATGCC
TGGGTTATTTATGAGGTGCTCCTCTTCTACTCATTCTCCTTGCTCCTCTT
CCCGGACCGTGTTAATCTTAATATCCCCATCAACTCTTATTACCCGCTTG
CCCGCTAACATGTTATTCCTTCGCCGGTATATGATAATTTTATATTTCAT
TTTTCAGATACACAGGCCGAGATTTTCTTCCGGGCGCGTTTCGCTATATT
TTATTTTCTTATTATACCGCGCTGTGTGTAAATTTTCTTCACCGCATTCG
TCCCTTTCATATTTTATATCCAGCCGGCGCTTTGCCTTTCTGCATGGGTG
GNTGCGTGGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_o11.g1 MSMg01no327_o11.g1 CHROMAT_FILE:
MSMg01no327_o11.g1 PHD_FILE: MSMg01no327_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:54 2005
         (278 letters)



>mm_chr1_16655633_16656310
          Length = 678

 Score =  495 bits (256), Expect = e-144
 Identities = 273/280 (97%), Gaps = 4/280 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatatagacccggttgtcctcgaaatcagagactcgcctacctattgacttcccattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatatagacccggttgtcctcgaaatcagagactcgcctacctattgacttcccattct 260

                                                                       
Query: 61  aggattaaagatttgctctgctgcgcagggacttatttcttactctagagctaaaggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggattaaagatttgctctgctgcgcagggacttatttcttactctagagctaaaggtca 320

                                                                       
Query: 121 gaagggcgctaaatgctaagaaattgatgcagcacgtggagctagcctcctaagttgtgt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggcgctaagtgctaagaaattgatgcagcacgtggagctagcctcctaagttgtgt 380

                                                                       
Query: 181 tacttgtccgtttttaggaatttctttgattacagagtgaaaggtggggtgtggatgtta 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tacttgtccgtttttaggaatttctttgattacggagtgaaaggtggggtgtggatgtta 440

                                                   
Query: 241 tctt--acaaagtaggtagtatgttaaactatactataaa 278
           |  |  |||||||| |||||||||||||||||||||||||
Sbjct: 441 t--tgaacaaagtacgtagtatgttaaactatactataaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)