XXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCAAAT
CAATGATGTCACGATTTCATATCTTATAATTGATTAAAATTATAAATGTG
AATACAAATTACTCATAGGTTCAGTTTTTTTATTGTATGAATCTGATGCC
TTTTGTATATGAGTTTTTAAGTATCCTTTAATCTCCAAAGCAAACTTTCT
ATAACACACTAATTTCCTCAAAGAATCCGGAAAACCCGTGTCCCCTTCTT
TTGTACTTTTTCATCTTATTTGTCCTCCTCTGATTAATCTCCTTACTGAT
TTCTTGAAGATCTAAAGAAGCCACTCTCTAACAGTCTCCTCCCAACCTGT
AGTGCTATGCCTCTCTGCTCCATTTCATTATCCCAGTTACTAGTGTCTCA
TCTTTTCCTCTGTCTCACACTGCCCTATACATCTGAAAGTTCCTTCAGTG
TAGGACCTGTGCCCCCAGCCAAGCCTTTTTCTACTGAGCACCACCAGAAA
TACATGTAATTGACAGCTCCTTGCTCTGGCCTTCTTGCTGGCAAAACACT
CAAATAAAAAAGTACAGTCCTAATTCGGACTGAAACAAGCCAATAACATC
TGAATTACTATTGTGACCAAAACTTTCTGAACATGTCTTCTGAGTAGAAG
ACAGCCTGCTTTGGATGCATGAATTTTTGGTAATGAAACTTCAGTAATTT
ATCGTACTCTCAAAATCAGTGATGTGTTTACAACATGATGTTA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCNAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGTGTGGACGTGGAGAAAGAGGAAAACCCCTCATGN
NNTGTGGGATTGCAGGCTTGTACCCCACTCTGGAACTCAGTCTGGCGTTT
CCTCCAAAATTTGACANTATACTACCGGAAGATCCAGCAATACCTCTCCT
AGGCATATATCCAGAAGAATGCCCCACCTGGNTAAAANGGACCCATGCTT
CCCTATATTCCTAAGCCCCCCTTTNTTTTTAATGCCGAGAGTTGGACAAA
ACCCCAAAAGCCTCCCCACCAAAGGAAGGACNCCCCAAAAAGGGGGAAAT
TCTAACCCAGGAAAAACTAACCCCCTCTTTTAATAAGAAGGATTTTTTTA
CCTTTCCTTTACCAAAGGGTAGGGTCCCGGGGGGGGGCCTCCCCCCGGGG
GGGGGGGAAAAATTTTCCCCGGGGGGGCCACGCGGGGAAATGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCNNCCCCCCCCAAAAAA
AAAAAAAAAATTTTTCTCTACTACTTTTTTACCCCCAAAGAAAAAAAAAA
AAAGGGTGGGTATTATTGGTTGCTCACACGTAACNAANNNTTGAANNNC

Query= MSMg01no327_p19.b1 MSMg01no327_p19.b1 CHROMAT_FILE:
MSMg01no327_p19.b1 PHD_FILE: MSMg01no327_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:59 2005
         (716 letters)



>mm_chr1_47987583_47988698
          Length = 1116

 Score = 1261 bits (652), Expect = 0.0
 Identities = 685/700 (97%), Gaps = 9/700 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcaaatcaatgatgtcacgatttcatatcttataattgattaaaattataaatgtg 73
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattcaaatcaatgatgttacgatttcatatcttataattgattaaaattataaatgtg 633

                                                                       
Query: 74  aatacaaattactcataggttcagtttttttattgtatgaatctgatgccttttgtatat 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aatacaaattactcataggttcagtttttttattgtatgaatctgatgccttttgtatat 573

                                                                       
Query: 134 gagtttttaagtatcctttaatctccaaagcaaactttctataacacactaatttcctca 193
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagttttcaagtatcctttaatctccaaagcaaactttctataacacactaatttcctca 513

                                                                       
Query: 194 aagaatccggaaaacccgtgtccccttcttttgtactttttcatcttatttgtcctcctc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagaatccggaaaacccgtgtccccttcttttgtactttttcatcttatttgtcctcctc 453

                                                                       
Query: 254 tgattaatctccttactgatttcttgaagatctaaagaagccactctctaacagtctcct 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgattaatctccttactgatttcttgaagatctaaagaagccactctctaacagtctcct 393

                                                                       
Query: 314 cccaacctgtagtgctatgcctctctgctccatttcattatcccagttactagtgtctca 373
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cccaacctgcagtgctatgcctctctgctccatttcattatcccagttactagtgtctca 333

                                                                       
Query: 374 tcttttcctctgtctcacactgccctatacatctgaaagttccttcagtgtaggacctgt 433
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 332 tcttttcctctgtctcacactgccctatacatctgaaagttcctttagtgtaggacctgt 273

                                                                       
Query: 434 gcccccagccaagcctttttctactgagcaccaccagaaatacatgtaattgacagctcc 493
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 272 gcccccagccaagcctttttctactgagcaccaccagaaatacatgtaattgaca----- 218

                                                                       
Query: 494 ttgctctggccttcttgctggcaaaacactcaaataaaaaagtacagtcctaattcggac 553
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 --gctctggccttcttgctggcaaaacactcaaataaaaaagtacagtcctaattcggac 160

                                                                       
Query: 554 tgaaacaagccaataacatctgaattactattgtgaccaaaactttctgaacatgtcttc 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgaaacaagccaataacatctgaattactattgtgaccaaaactttctgaacatgtcttc 100

                                                                       
Query: 614 tgagtagaagacagcctgctttgg-atgcatgaatttttggtaatgaaacttcagtaatt 672
           |||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 99  tgagtagaagacagtctgcttcggaat-catgaatttttggtaatgaaacttcagtaatt 41

                                                   
Query: 673 tatcgtactctcaaaatcagtgatgtgtttacaacatgat 712
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  tatcgtactctcaaaatcagtgatgtgtttacaacatgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)