TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNGAGGATCCGCGG
AATTCATTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCAGGTATTTATTTATTTATTTTTGAGACAGGGTTTCTC
TGTATAGCCCTGGTTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTC
GAACTCATAAATCCACCTGCCTCTACCTCCAAAGTACTGGGATTAAAGGT
GTGTGCCACCACTGCCTGGCCATTCTTATTAATTATAAAAACCTCTCTTT
ATGCTTTGAAAGAGCTATCTCTTTTCTTGAGAAGCACATGTGATTTTTAA
AAATTGTCCACTATAACTTATGAGATTATAATATAATGACTTCATTCCTC
TCTTCCCTTTCCTTTCTCCAAGCACTTCTATATATTATTCCATATCACTA
AAAAAGTATTATTCTATCAAGTACATACTTTTATGCATGCATCTTAAAAC
ATACTCATATTGTGTACATGCATTCTTTTATATTATGTCACACATAGATG
CATATATTTATGAATATTTATATGTATATAAAATTCATTTCTTGTGTAAA
TATAAAAAGCCTAGGAAAGAGAAGTATTTATATGACTCAGCTACACTAGC
CTCGTGAATATATTCCCAACTGTATGTTTATCCTAAAGTAGAGATGTTGT
TTCATACTTCGTCCATTGAAGCTCTAATCATN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACTCTACTTTCAAAGTGATAATTAG
TCTGTGAACCCATTAATTCAAAAGTAACTGCCAATAGCAGTGCCATATTG
AAAATACTAAATATAGCATCTATAAAACTTCATAAAAATCTTATATATTT
CTCAAATTTATTTAGTTAAATGGACAAAGCAGTTTAATGAACAGTTTTGA
AAATAAATGCGTTATAAAATTCACTCTTAGTTACCCACTAAATTCTTACT
GCTTCTGATTTGCCAATAGAATTATTTTTACAAACTGAAGTGATTTTTTT
TACCACTCAAAGTTTTAACAATAGCTATGCGAGAGTTGGAGTTAGTGAAA
TATAACATAAGCATATGCACATGTTAATTTATGTGCATGTTTTATAAAAT
CTTTCCTGGAGTTTAGCATTTGAATAGATATGTTATGAGATTCATGAGAT
TCTCTTTGGGATATCAACACTAAGGTTATTTATATGAAATTTTGTATTTC
AAATCTCATTCTTTAAACAATAAAATTAAAACCAAGGCCAGTGATTTGGC
ACAGTTGGTAGAGATTCATACCATTAAACTAATGAACCAATCCATAGAAT
CTACTTAGTTGAAGTAGAGAAATGACTTCTGAAATTTGTCCTTTAACCCC
TACACAGGTGCCATGACTTGAACACA

Query= MSMg01no328_a12.g1 MSMg01no328_a12.g1 CHROMAT_FILE:
MSMg01no328_a12.g1 PHD_FILE: MSMg01no328_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:03 2005
         (516 letters)



>mm_chr1_143126431_143127352
          Length = 922

 Score =  917 bits (474), Expect = 0.0
 Identities = 508/522 (97%), Gaps = 6/522 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactctactttcaaagtgataattagtctgtgaacccattaattcaaaagtaactgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcactctactttcaaagtgataattagtctgtgaacccattaattcaaaagtaactgcca 663

                                                                       
Query: 61  atagcagtgccatattgaaaatactaaatatagcatctataaaacttcataaaaatctta 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 662 atagcagtgccatattgaaaatactaaatataacatctataaaacttcataaaaatctta 603

                                                                       
Query: 121 tatatttctcaaa-tttatttagttaaatggacaaagcagtttaatgaacagttttgaaa 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tatatttctcaaagtttatttagttaaatggacaaagcagtttaatgaacagttttgaaa 543

                                                                       
Query: 180 ataaatgcgttataaaattcactcttagttacccactaaattcttactgcttctgatttg 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataaatgtgttataaaattcactcttagttacccactaaattcttactgcttctgatttg 483

                                                                       
Query: 240 ccaatagaattatttttacaaactgaagtga-----ttttttttaccactcaaagtttta 294
           |||||||||||||||||||||||||||||||     ||||||||||||||||||| ||||
Sbjct: 482 ccaatagaattatttttacaaactgaagtgatgtttttttttttaccactcaaagattta 423

                                                                       
Query: 295 acaatagctatgcgagagttggagttagtgaaatataacataagcatatgcacatgttaa 354
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 422 acaatagctatgtgagagttggaattagtgaaatataacataagcatatgcacatgttaa 363

                                                                       
Query: 355 tttatgtgcatgttttataaaatctttcctggagtttagcatttgaatagatatgttatg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 tttatgtgcatgttttataaaatctttcctggagtttagcatttgaatagatacgttatg 303

                                                                       
Query: 415 agattcatgagattctctttgggatatcaacactaaggttatttatatgaaattttgtat 474
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 302 agattcataagattctctttgggatatcaacactaaggttatttatatgaaatattgtat 243

                                                     
Query: 475 ttcaaatctcattctttaaacaataaaattaaaaccaaggcc 516
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttcaaatctcattctttaaacaataaaattaaaaccaaggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 922
Length adjustment: 10
Effective length of query: 506
Effective length of database: 912
Effective search space:   461472
Effective search space used:   461472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)