BAC Information

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BAC

Clone NameMSMg01-328H10
Chromosome1 (Build37)
Map Location 62,670,751 - 62,671,077
singlet/doubletsinglet
Overlap genePard3b
Upstream genenone
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H10.T7 (MSMg01no328_h10.b1)MSMg01-328H10.TJ (MSMg01no328_h10.g1)
ACCAG445554AG445555
length735753
length of high quality
(start - end)
500 (45 - 544)333 (77 - 409)
definitionCHROMAT_FILE: MSMg01no328_h10.b1 PHD_FILE: MSMg01no328_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005CHROMAT_FILE: MSMg01no328_h10.g1 PHD_FILE: MSMg01no328_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTCACCTGATGACTACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTACCCCACCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGTATATTAGCCCCCAACCT
AGGATACCCCAGATATAAGATATAATTTGCTTAACCCATGAAACTCCAGA
AGAATGAAAACTCAAGTGTGCACCCTATGCCCCTN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAACACACTCAGCTGGTACAA
GATACTCGGCATACTATCTAGTAATGGATATTATCTAGGATAGTTCTCTC
ATGGGAAGAAAGTTTCTCCTGTCTTTCAACCGACTGCTCATTGGAAGAAA
GATGTGCCCCTTTCTTCCCCAGCTGAATTCCTGTGTGATGTCTGGTGGCA
AGGCTCCCATCTCAGGGGGTGCCAGCCCATTCCTGACTACATAGCTAGAC
TCTGAAAAAGTAAGATACTGAGATCAAATAAAATAAGATTGGTTAGGACT
TAAACAACAATGCTGAAGTATGGGTTAGTGTGCACAGTCAGTATGCAGGG
TTGCAGGATAATATAATCTCCACCCAATTGCACGGTGTAGCCAATCAAGC
CCTAACCAATTGTAAATTACCCTTGCATGTTCTGAGCTCCCATCAACATC
ATCCAAGCAATGAGGTTCCATCCCTTGTGTTTTAACTCCATAGCAGGGAT
ACTTTATTTTGCTCCTGGATCCTCTCCGTGTTCACATAACACTGCCTCAG
TATCTTATAGACCCTGCTTCTAATTTCCCCTGGATACTTGGTCCGGTGTA
GACCCTTCAATTTGTTTTGTCCCGATTCGCTTATTACCCCATTTTTCCTC
TTCCTTGTGGTACTATTTTCCACATTTTTCCATTACCCCCTTGTCCTTTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h10.g1 MSMg01no328_h10.g1 CHROMAT_FILE:
MSMg01no328_h10.g1 PHD_FILE: MSMg01no328_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:37 2005
         (333 letters)



>mm_chr1_62670551_62671277
          Length = 727

 Score =  574 bits (297), Expect = e-168
 Identities = 322/333 (96%), Gaps = 6/333 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaacacactcagctggtacaagatactcggcatactatctagtaatggatattatct 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctctaacacactcagctggttcaagatactcggcatactatctagtaatggatattatct 468

                                                                       
Query: 61  aggatagttctctcatgggaagaaagtttctcctgtctttcaaccgactgctcattggaa 120
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 aggatagttctctcatgagaagaaagtttctcctgtctttcaactgactgctcattggaa 408

                                                                       
Query: 121 gaaagatgtgcccctttcttccccagctgaattcctgtgtgatgtctggtggcaaggctc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaagatgtgcccctttctt-cccagctgaattcctgtgtgatgtctggtggcaaggctc 349

                                                                       
Query: 181 ccatctcagggggtgccagcccattcctgactacatagctagactctgaaaaagtaagat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||     |||||
Sbjct: 348 ccatctcaggggttgccagcccattcctgactacatagctagactctgaa-----aagat 294

                                                                       
Query: 241 actgagatcaaataaaataagattggttaggacttaaacaacaatgctgaagtatgggtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 293 actgagatcaaataaaataagattggttaggacttaaacaacaatgctgaagtacgggtt 234

                                            
Query: 301 agtgtgcacagtcagtatgcagggttgcaggat 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agtgtgcacagtcagtatgcagggttgcaggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 727
Length adjustment: 9
Effective length of query: 324
Effective length of database: 718
Effective search space:   232632
Effective search space used:   232632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)