Query= MSMg01no328_k12.b1 MSMg01no328_k12.b1 CHROMAT_FILE:
MSMg01no328_k12.b1 PHD_FILE: MSMg01no328_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:52 2005
(643 letters)
>mm_chr1_6932786_6933829
Length = 1044
Score = 485 bits (251), Expect = e-141
Identities = 293/315 (93%), Gaps = 16/315 (5%)
Strand = Plus / Minus
Query: 335 aattcttccatagtttattatgggtaaatctctttaccacccg-----catatagccaat 389
||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct: 905 aattcttccatagtttattatgggtgaatctcttta-----tgattgttatatagccaat 851
Query: 390 atatattatactatatattcatatattat-aagactgacaaaagcaagaagtaaaatacc 448
|||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 850 atatgt-----tatatattcatatattataaagactgaccaaagcaagaagtaaaatacc 796
Query: 449 cagtaagtattacctgctttatttcacaaagagaatttacaagatattaagagcacttac 508
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cagtacgtattacctgctttatttcacaaagagaatttacaagatattaagagcacttac 736
Query: 509 tatgagtttgaaagtagtctatgaacccagaattagaagagaaatagttttgtgggagag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tatgagtttgaaagtagtctatgaacccagaattagaagagaaatagttttgtgggagag 676
Query: 569 gacagtccaacattttagaagatagttgaagtatcattgttgccgatcagctacctggtt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gacagtccaacattttagaagatagttgaagtatcattgttgccgatcagctacctggtt 616
Query: 629 ctctgtgttctatcc 643
|||||||||||||||
Sbjct: 615 ctctgtgttctatcc 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_k12.g1 MSMg01no328_k12.g1 CHROMAT_FILE:
MSMg01no328_k12.g1 PHD_FILE: MSMg01no328_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:52 2005
(341 letters)
>mm_chr1_6790694_6791441
Length = 748
Score = 623 bits (322), Expect = 0.0
Identities = 339/348 (97%), Gaps = 7/348 (2%)
Strand = Plus / Plus
Query: 1 ttctctgcatccaaaaatgcttttagttactatggcaatatttacttgatcctggcagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgcatccaaaaatgcttttagttactatggcaatatttacttgatcctggcagtc 260
Query: 61 cagtgttgatttagggagataattaccagaaaggaagatgatggagatgtatttttgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgttgatttagggagataattaccagaaaggaagatgatggagatgtatttttgagt 320
Query: 121 gtccttgtcagagacaatgtttattaaaaaaaaaa---tgaatgagacaaaaaaaaa--- 174
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gtccttgtcagagacaatgtttattaaaaaaaaaaaaatgaatgagacaaaaaaaaaaaa 380
Query: 175 -tgcacattgtctcccaggcaaatgctctctgccacagcttcatgctgaatgctgtactt 233
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 atgcacattgtctcccaggcaaatgctctctgtcacagcttcatgctgaatgctgtactt 440
Query: 234 tcttcccttcatagatgtttattaacaaagaatgtgcttcacttggtgtccttaacagtc 293
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcccttcaaagatgtttattaacaaagaatgtgcttcacttggtgtccttaacagtc 500
Query: 294 tgcaaggaggcttatcagcttatgctgcccatcccccacttgcctttg 341
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaggaggcttatcagcttatgctgcccatcccccacttgcctttg 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 748
Length adjustment: 9
Effective length of query: 332
Effective length of database: 739
Effective search space: 245348
Effective search space used: 245348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
