Query= MSMg01no328_n10.b1 MSMg01no328_n10.b1 CHROMAT_FILE:
MSMg01no328_n10.b1 PHD_FILE: MSMg01no328_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:06 2005
(266 letters)
>mm_chr1_37572320_37572984
Length = 665
Score = 427 bits (221), Expect = e-124
Identities = 245/253 (96%), Gaps = 1/253 (0%)
Strand = Plus / Minus
Query: 13 ggttgtgtcctcgtggtttaattgacctctgacatccaatcaaccatgtattcattgtta 72
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 464 ggttgtgtcat-gtggtttaattgacctctgacatccaatcaaacatgtattcattgtta 406
Query: 73 tctcatcctagattttatgtgtatgatgataactatgaaactcacttttgcttttactgg 132
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 405 tctcatcctagattttatgtgtatgatgataactatgaaactcacttttggttttactgg 346
Query: 133 tatttctgtatggattaagttgagaagaactaataccctgaaatatctgaatatttgtgc 192
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 345 tatttctgtatggattaagttgggaagagctaataccctgaaatatctgaatatttgtgt 286
Query: 193 ctttgtttcagaataatcatgaagtttttccatatatacattgttaggtttgtatctggg 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 ctttgtttcagaataatcatgaagtttttccatatatacattgttaggtttgtatctgtg 226
Query: 253 tgtgtgtgtgtgt 265
|||||||||||||
Sbjct: 225 tgtgtgtgtgtgt 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 665
Length adjustment: 9
Effective length of query: 257
Effective length of database: 656
Effective search space: 168592
Effective search space used: 168592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no328_n10.g1 MSMg01no328_n10.g1 CHROMAT_FILE:
MSMg01no328_n10.g1 PHD_FILE: MSMg01no328_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:06 2005
(263 letters)
>mm_chr1_37401607_37402269
Length = 663
Score = 501 bits (259), Expect = e-146
Identities = 262/263 (99%)
Strand = Plus / Plus
Query: 1 tccaggtgagagaatatttcacccgatggaggcccagtcctcctctccactgccagtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggtgagagaatatttcacccgatggaggcccagtcctcctctccactgccagtgtc 260
Query: 61 ctaccaaggagtcagggctcagatgggctggtaaggggaggctcaaaggacctggaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccaaggagtcagggctcagatgggctggtaaggggaggctcaaaggacctggaggat 320
Query: 121 atacctgctgcatgctgatttcctcagtttcttttttctacaggtttcttccagctggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacctgctgcatgctgatttcctcagtttcttttttctacaggtttcttccagctggac 380
Query: 181 atgaaagtagttgttaaaagtgaatcttggcggctggagagatggctcagtggctaagag 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 atgaaagtagttgttaaaagtgaatcttgggggctggagagatggctcagtggctaagag 440
Query: 241 ctcttgctgctctcacagaggac 263
|||||||||||||||||||||||
Sbjct: 441 ctcttgctgctctcacagaggac 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
