BAC Information

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BAC

Clone NameMSMg01-328P15
Chromosome1 (Build37)
Map Location 155,428,159 - 155,586,013
singlet/doubletdoublet
Overlap geneLOC626096, Rgs8
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328P15.T7 (MSMg01no328_p15.b1)MSMg01-328P15.TJ (MSMg01no328_p15.g1)
ACCAG445930AG445931
length810712
length of high quality
(start - end)		162 (42 - 203)556 (74 - 629)
definitionCHROMAT_FILE: MSMg01no328_p15.b1 PHD_FILE: MSMg01no328_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:16 2005CHROMAT_FILE: MSMg01no328_p15.g1 PHD_FILE: MSMg01no328_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,585,856 - 155,586,013)(155,428,159 - 155,428,714)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGGATCCGCGGAAT
TCTATGCATTCCGGAAAACAATGTTTTGTCACTTTCAGGATACAGAATTC
CATCTCCTAGGGGGCTTCTCCAGCAGTAAGGACTGCTCTATGCTCTGTGA
AGTAAAAGGTCGGGAAAGGAAGATGGGAGGGAGTGGGAAGGAGGAAAGGA
AAGGGAGGCGAGTCTTTTCTTCGTTATTTTTTTTTCTTGCCGCTGCTTTT
TCTACTTTCTTTCTAAACTCTTACGTGATTCACTTTTCTCTTCACCGAAG
CGTTATTAATGACTTTTTTTTTTTTTTTTTTACTCTCCTATTTTTCCAAT
TAAAAAATTTTTTTCTCTTCTATCCTCCTTTCTTTATCGTCTTATTTATT
TTTATTTCCTTTTTTTTTTTATTTCCCCCCCCCCCCATCCTCAATAATTT
CCTCCGTTCATATTATTTTCTTCACCCTTTTAATACTTAGTTATATATCC
TTCCAATCTAATTTCTTTTTCCAACTTTCTTTTTCTTTTCTACCATATAA
TTATATACTCCTCCTCTTGTCCACTATCTCTTAATTTTCTAATTCTTCTT
CATTTTTAAATTTTCTATGGTTTCACTTCTATTTTCACAAGTTCTAAATC
TTTTTTTTCCTTCTTATTCTCGTCGTTTTATTTCTGTGCTGTCCTTCACT
TTTCCCCCCTTAATCTCCTTTTTTATCAATTTCTATCTTCCCTTTATTTC
CGATCGATCAACCTCGCCTACCCTATATATCACCTGTTTCAAATACTTTC
TTTTTTATTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGAATCAGATCCTCTGAAATTTCAT
AGCTGTGTACTGCCATATAGGTTCTGGAAACCGAACCCAGGTCCTCTGTA
AATGCTCTTAACTGCTGAACCATCTCTGTGGCACCCAAACCCATATTTTA
GGACTAGATTCTGAGGCTCCATGTTTCTCAGATGACATTGAGGTGGTAGT
CACAGTATCTTGTAGAGAATTCATCTACAAAGGGAGAAAGGTAAATAAAA
CGGTGCATAGGGTAGGAACCCAGCATTTTGGATTTCAAAAAATCAAAAAA
TTAAATTTAAAACTGGAGAAAGATACAAGATTTTTAAACATTTATATCAC
CAAGCAAAGATATTACATTATAAAAAACAAAATGTTATCTAATATCGATG
CTATTTCATAAAAGAAAGGGCAGTTTAATATTGAAAAAAGCAAACTCACA
ACCACAGAAAAGGAACATTATTTGAGGCGGAGAGTATAACTTTCATACTA
TAACTGGTAACTGGTCATTGCCTTTCCCAGTTCTCCGAGGGAGAAATCTC
TCAGAACAGTTCCAGTCGGTAAACTGGTGTCTGGGCACACCACACTCTGA
GATGTCTTGTGNGCTCTGTCTAGAAGCTTTATTCTAAGTGCCAGAAATAT
ATGGTCAGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_p15.b1 MSMg01no328_p15.b1 CHROMAT_FILE:
MSMg01no328_p15.b1 PHD_FILE: MSMg01no328_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:16 2005
         (162 letters)



>mm_chr1_155585652_155586213
          Length = 562

 Score =  282 bits (146), Expect = 6e-81
 Identities = 155/158 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctatgcattccggaaaacaatgttttgtcactttcaggatacagaattccatct 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggaattctatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattccatct 303

                                                                       
Query: 65  cctagggggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cctagggggcttctccagcagtaaggactgctctatgctctgtgaagtaaaaggtcggga 243

                                                 
Query: 125 aaggaagatgggagggagtgggaaggaggaaaggaaag 162
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaggaagatgggagggagtgggaaggaggaaaggaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no328_p15.g1 MSMg01no328_p15.g1 CHROMAT_FILE:
MSMg01no328_p15.g1 PHD_FILE: MSMg01no328_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:17 2005
         (556 letters)



>mm_chr1_155427959_155428914
          Length = 956

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaatcagatcctctgaaatttcatagctgtgtactgccatataggttctggaaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaatcagatcctctgaaatttcatagctgtgtactgccatataggttctggaaaccg 260

                                                                       
Query: 61  aacccaggtcctctgtaaatgctcttaactgctgaaccatctctgtggcacccaaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccaggtcctctgtaaatgctcttaactgctgaaccatctctgtggcacccaaaccca 320

                                                                       
Query: 121 tattttaggactagattctgaggctccatgtttctcagatgacattgaggtggtagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttaggactagattctgaggctccatgtttctcagatgacattgaggtggtagtcac 380

                                                                       
Query: 181 agtatcttgtagagaattcatctacaaagggagaaaggtaaataaaacggtgcatagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatcttgtagagaattcatctacaaagggagaaaggtaaataaaacggtgcatagggt 440

                                                                       
Query: 241 aggaacccagcattttggatttcaaaaaatcaaaaaattaaatttaaaactggagaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaacccagcattttggatttcaaaaaatcaaaaaattaaatttaaaactggagaaaga 500

                                                                       
Query: 301 tacaagatttttaaacatttatatcaccaagcaaagatattacattataaaaaacaaaat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tacaagatttttaaacatttatatcaccaagcaaagatattaaattataaaaaacaaaat 560

                                                                       
Query: 361 gttatctaatatcgatgctatttcataaaagaaagggcagtttaatattgaaaaaagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttatctaatatcgatgctatttcataaaagaaagggcagtttaatattgaaaaaagcaa 620

                                                                       
Query: 421 actcacaaccacagaaaaggaacattatttgaggcggagagtataactttcatactataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcacaaccacagaaaaggaacattatttgaggcggagagtataactttcatactataa 680

                                                                       
Query: 481 ctggtaactggtcattgcctttcccagttctccgagggagaaatctctcagaacagttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtaactggtcattgcctttcccagttctccgagggagaaatctctcagaacagttcc 740

                           
Query: 541 agtcggtaaactggtg 556
           ||||||||||||||||
Sbjct: 741 agtcggtaaactggtg 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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