Query= MSMg01no329_g22.b1 MSMg01no329_g22.b1 CHROMAT_FILE:
MSMg01no329_g22.b1 PHD_FILE: MSMg01no329_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:53 2005
(275 letters)
>mm_chr1_35196339_35197012
Length = 674
Score = 462 bits (239), Expect = e-135
Identities = 262/271 (96%), Gaps = 5/271 (1%)
Strand = Plus / Plus
Query: 5 gaattccctaggcccttccttctgggacccagtgtggctagtgttcaccgttttcactct 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctaggcccttgattctgggacccagtgtggctagtgttcaccgttttcactct 264
Query: 65 gaggatgagatggagcagacagtttgtgacagaggagtctaaccatgtctcctctcttgt 124
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 265 gaggatgagatggagcagacaatttgtgacagaggactctaaccatgtctcctctcttgt 324
Query: 125 atttgctccatttggttttacttatagaaatgttcctct--ataaccacagagcatatgc 182
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 325 atttgctccatttggttttacttatagaaatg--cctctctataaccacagagcatatgc 382
Query: 183 taaaatgtcaatgcccagcaatgtttgggatagagaaattatggtgctaattgtggcaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taaaatgtcaatgcccagcaatgtttgggatagagaaattatggtgctaattgtggcaga 442
Query: 243 gcagtcttttatacaatgggagcaagtgagc 273
||||||||||||||| |||||||||||||||
Sbjct: 443 gcagtcttttataca-tgggagcaagtgagc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 674
Length adjustment: 9
Effective length of query: 266
Effective length of database: 665
Effective search space: 176890
Effective search space used: 176890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no329_g22.g1 MSMg01no329_g22.g1 CHROMAT_FILE:
MSMg01no329_g22.g1 PHD_FILE: MSMg01no329_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:53 2005
(339 letters)
>mm_chr1_35365665_35366403
Length = 739
Score = 601 bits (311), Expect = e-176
Identities = 329/335 (98%), Gaps = 1/335 (0%)
Strand = Plus / Minus
Query: 1 ataattcagcaatggattatgtaaggaagatgctgttttatggcagtttcttccttaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ataattcagcaatggattatgtaaggaagatgctgttttatggcagtttcttccttaact 276
Query: 61 gaaacatcctgtgtgtctcggagaacagaagcctgaaagcatcttgaggacctctcccta 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaaacaccctgtgtgtctcggagaacagaagcctgaaagcatcttgaggacctctcccta 216
Query: 121 gcagtgtgaaggagggagacttggccagctgaattgcagagagaggagacaggctgttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gcagtgtgaaggagggagacttggccagctgaattgcagagagaggagacaggctgttaa 156
Query: 181 gttgcctgtatgttattcagagtgctccagtgttgtagctttcc-cagttatttcccctg 239
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 155 gttgcctgtatgttattcagagtgctccagtgttgtaactttcctcagttatttcccctg 96
Query: 240 ttcccatgagggtagccttttcagtaatgcagctgtctttgagtcttccctgcttcttgt 299
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttcccacgaggataggcttttcagtaatgcagctgtctttgagtcttccctgcttcttgt 36
Query: 300 aagtagcttttcacttgtactcagtaaactgttac 334
|||||||||||||||||||||||||||||||||||
Sbjct: 35 aagtagcttttcacttgtactcagtaaactgttac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
