NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTGGTAGTCTCTACTGAAAATTGTTCTTAACTGGGCATGGTG
AGTGGTCACCAAAAGCTCAAGGCCTGAGGCTTATGTATTTCTAGTTTTTG
AGATTATAATTTAATTACACCATTTCTCCTTCCCTTTCCTTCTTTCAAAC
TTTCCCATATAACCCTTCCCGCTCTCGTTCAGATTTCATGGCCTCTTTTT
TCATTAGTCATTATTGCATGTCTATATGTATATTCCTAAATATAACCTAT
TGAGTCCATATCATGTTACCTGTATGCAAGTTTTAAGAATTGACTGTGGG
TGCTAGATAACCATTTGGTGTAGTCTTCCCTGGGAAGTACCACCTCTCTC
TACTCAGTTGCCTGTTGGTTGCTTGTGTAGGATCCCATCCATTTGGCATG
TTCATCGTTGTCATCCTTGTTCAGTTCAGGCCTGGGCAGTTGTGCTGGTG
AGACTGTATAGGTGTGGCTTCTGGTGTTACTAGAAGACGGTCTCACAGCA
AACTGGCTGATCCTATGGCTCTTACACTCTGACCCATCTTTTGCAGTGAT
CTCTGAGCCTTGGAGATGGGAGTTTTTTTATAGAGGTCTTTTTTAGGATA
ATTTCCTACTTTCGTTTTTTATTACCAGCTGCCTACTTTCTATCTTTCAT
CGGGTGCAACGTAGTTTCTTTTTCGCTTA

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCAGCCAGGACTACACAG
AGAAACTGTTTTGAGGGGGAAAAAAAGAAAGAGAGTGGGCACGGAAAGCC
AAAGGAAAAAAAGAAAAATACATACTATGTAGTATAAAATTATAAGATAC
ATCACTGTGAATCCATGCTAATGTAAACAAATAAACAAGAAACAAACCTT
CAAACAAATTTTAAAAGATTTAAAATACATTTTTAATTAAAATATAATGA
CATCACCTTTTGTCCCTTCCCCCAGTTCCATCCATGCCTCCCCAAACTCT
TAAATTGATGGCCTCTAAAGAAGGATTTATTATTATGTATATGTGTGTTT
ACATGAGCTGTGTGTACCATGTGGCTGCACATGGAGGCGAGATGGGGCAC
TGGGCCCCTGCACGCTCCTGAGACTGAGATCTCTCCAGCCCCACAAAATA
ATTTTAAATGGTTTCTGCACTCACTTTGCCCCTCTTAAAGGGCAATACAT
AATGATTTACTTAGAAAAGGAGTAGGGTTCTTCACAGTGGAGAAAGCTGA
CATACAGTGTTTAGCCAAGGACTCACACCTAGTTCCGATCCCTGCACAGT
GCCATGAGCCTTTACTTCTTTTTGTTGTTTTTAACTTGTTCAGAGTAAAT
TTTTATCTAAGACAGGCTTTCAGGATGCTAATGAN

Query= MSMg01no329_i03.g1 MSMg01no329_i03.g1 CHROMAT_FILE:
MSMg01no329_i03.g1 PHD_FILE: MSMg01no329_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:59 2005
         (648 letters)



>mm_chr1_60550236_60551283
          Length = 1048

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%)
 Strand = Plus / Minus

                                                                        
Query: 21   agagaaactgttttgagggggaaaaaaagaaagagagtgggcacggaaagccaaaggaaa 80
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1048 agagaaactgttttgagggggaaaaaaagaaagagagtgggcagggaaagccaaaggaaa 989

                                                                        
Query: 81   aaaagaaaaatacatactatgtagtataaaattataagatacatcactgtgaatccatgc 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  aaaagaaaaatacatactatgtagtataaaattataagatacatcactgtgaatccatgc 929

                                                                        
Query: 141  taatgtaaacaaataaacaagaaacaaaccttcaaacaaattttaaaagatttaaaatac 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  taatgtaaacaaataaacaagaaacaaaccttcaaacaaattttaaaagatttaaaatac 869

                                                                        
Query: 201  atttttaattaaaatataatgacatcaccttttgtcccttcccccagttccatccatgcc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  atttttaattaaaatataatgacatcaccttttgtcccttcccccagttccatccatgcc 809

                                                                        
Query: 261  tccccaaactcttaaattgatggcctctaaagaaggatttattattatgtatatgtgtgt 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tccccaaactcttaaattgatggcctctaaagaaggatttattattatgtatatgtgtgt 749

                                                                        
Query: 321  ttacatgagctgtgtgtaccatgtggctgcacatggaggcgagatggggcactgggcccc 380
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 748  ttacatgagctgtgtgtaccatgtgggtgcacatggaggcgagatggggcactgggcccc 689

                                                                        
Query: 381  tgcacgctcctgagactgagatctctccagccccacaaaataattttaaatggtttctgc 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  tgcacgctcctgagactgagatctctccagccccacaaaataattttaaatggtttctgc 629

                                                                        
Query: 441  actcactttgcccctcttaaagggcaatacataatgatttacttagaaaaggagtagggt 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  actcactttgcccctcttaaagggcaatacataatgatttacttagaaaaggagtagggt 569

                                                                        
Query: 501  tcttcacagtggagaaagctgacatacagtgtttagccaaggactcacacctagttccga 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  tcttcacagtggagaaagctgacatacagtgtttagccaaggactcacacctagttccga 509

                                                                        
Query: 561  tccctgcacagtgccatgagcctttacttctttttgttgtttttaacttgttcagagtaa 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 508  tccctgcacagtgccatgagcctttacttctttttgttgtttttaacttgttcagagtag 449

                                        
Query: 621  atttttatctaagacaggctttcaggat 648
            ||||||||||||||||||||||||||||
Sbjct: 448  atttttatctaagacaggctttcaggat 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)