BAC Information

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BAC

Clone NameMSMg01-330A23
Chromosome1 (Build37)
Map Location 52,607,143 - 52,763,580
singlet/doubletdoublet
Overlap geneGm553, EG433305, 5330401P04Rik, 2210010L05Rik
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, LOC100042094
Downstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A23.T7 (MSMg01no330_a23.b1)MSMg01-330A23.TJ (MSMg01no330_a23.g1)
ACCAG446717AG446718
length743743
length of high quality
(start - end)
614 (48 - 661)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no330_a23.b1 PHD_FILE: MSMg01no330_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005CHROMAT_FILE: MSMg01no330_a23.g1 PHD_FILE: MSMg01no330_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,763,011 - 52,763,580)(52,607,143 - 52,607,435)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCAAACAGATTCCCTTAATCATTCAACAACGTAGTTGAAAACA
GTATAAAATATATGTACATTTTCAAATACGCCCTCCTTACATCTAGAAAA
AGACACCTTCTAGCTATATGAAATAGATATGTTCTTTTTGCATTTTTTTG
TTTGTTTGTTTATGTTCTAGTACTGGTGAGTAAGCTCAGGGTCCTGTGCA
GGCTAGGTAAGCACTCTGCCACTGAGCTATCTCCCCAGGCCTTAGATACA
TATCTTCTATAACAAAATCATAATTAATTCTCTGCTGTTTGTCAATTCAA
TGAGCTTACACTTGTAGTCTTTCTTTCTAACCAACATTAGTAACTACTTA
GAAATCTACAGTTCACATTAACTCCCTGGTTTTATGTACCAAAAACATCT
CCCTTTTCCTGCTTAGTGATGTAATCAAGAAGGGGGCTTCTGGGGTTTCA
TAGTTGCTCTCAAGAGAGCTTTGAGGATTCCATCAATTTGAGGTTGGTTA
TTCCTCCATTTTGCTTTTAAATTCTGTCCATTAAAATATTAATTTGACTC
TTGAGGGATGCAAGAGTCTTGAGGGATGCAAGACTCCACAGGTAATCTGG
ATGTGGTGGTATGTCTGACATTCCAGCACTGTCCGAGGTATAAGGAGGGA
TGAGTTCATAGGCCATCTTAACCTGTCTCACACAGGCTTGGTC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTACATACCCAAGTAAGTCAATGCC
AGGTTGGAGGCCAAGCCATGAACATGAAAGATGTGAGCTCTAAAAGGCAA
GTGAAAATGAAAGTTAAAATTAGCATGTTTTCAAGTTTTGGAAGTTAATG
CATTCTCCTGACTGATACTTAGCAGATCACTAATCAATCAATCAATAGTC
AATACAGAAAAATATAAAGTATAGTGAATACTATAGTGGGTCAAAAAGAA
GATACTTTGAGATGGTAATTGAAAGTATACCTTTCATTATCTGTGGCTTT
CTTCTAGATCTGACATCTTCTGAGATGCACCCACCACCGCAAAAAAGCCT
TGCTTTCTTTGAAATGTTAAAGAGGAAGAAAGTAAAATTCTCATCACATA
CTTGAGTCATAGAAGCTAAATTTTCAACTGAAAAAAACAAAAACAAAACA
AAATAAAACAACAACAACAACAAAACCCACCTGCCTTTGTAGTGTGTCTG
TCTGCCTCCTGATTGGCCCCCAAGAGGAAAACCAACAGCTTTCATGGTCT
TCTTCACTAAAACCAGAAGAATTAAAGCATTTTTTTAAAAAAAAGCTATC
AATCTGACTTTAGTACTAAAATTAAAATCAACTTAAAATCAGCCCAAGTC
CTAACCCATAGTTAGTGTTCAATTGAAGTCTTGGTTGACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a23.b1 MSMg01no330_a23.b1 CHROMAT_FILE:
MSMg01no330_a23.b1 PHD_FILE: MSMg01no330_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:42 2005
         (614 letters)



>mm_chr1_52762567_52763580
          Length = 1014

 Score = 1056 bits (546), Expect = 0.0
 Identities = 564/570 (98%)
 Strand = Plus / Minus

                                                                        
Query: 45   ttgaaaacagtataaaatatatgtacattttcaaatacgccctccttacatctagaaaaa 104
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1014 ttgaaaacagtataaaatatatgtacattttcaaataggccctccttacatctagaaaaa 955

                                                                        
Query: 105  gacaccttctagctatatgaaatagatatgttctttttgcatttttttgtttgtttgttt 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  gacaccttctagctatatgaaatagatatgttctttttgcatttttttgtttgtttgttt 895

                                                                        
Query: 165  atgttctagtactggtgagtaagctcagggtcctgtgcaggctaggtaagcactctgcca 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  atgttctagtactggtgagtaagctcagggtcctgtgcaggctaggtaagcactctgcca 835

                                                                        
Query: 225  ctgagctatctccccaggccttagatacatatcttctataacaaaatcataattaattct 284
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 834  ctgagctatctccccaggccttagatacgtatcttctataacaaaatcataattaattca 775

                                                                        
Query: 285  ctgctgtttgtcaattcaatgagcttacacttgtagtctttctttctaaccaacattagt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 774  ctgctgtttgtcaattcaatgagcttacacttgtagtctttctttctaagcaatattagt 715

                                                                        
Query: 345  aactacttagaaatctacagttcacattaactccctggttttatgtaccaaaaacatctc 404
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714  aactacttagaaatctacagttcacattaattccctggttttatgtaccaaaaacatctc 655

                                                                        
Query: 405  ccttttcctgcttagtgatgtaatcaagaagggggcttctggggtttcatagttgctctc 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  ccttttcctgcttagtgatgtaatcaagaagggggcttctggggtttcatagttgctctc 595

                                                                        
Query: 465  aagagagctttgaggattccatcaatttgaggttggttattcctccattttgcttttaaa 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  aagagagctttgaggattccatcaatttgaggttggttattcctccattttgcttttaaa 535

                                                                        
Query: 525  ttctgtccattaaaatattaatttgactcttgagggatgcaagagtcttgagggatgcaa 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  ttctgtccattaaaatattaatttgactcttgagggatgcaagagtcttgagggatgcaa 475

                                          
Query: 585  gactccacaggtaatctggatgtggtggta 614
            ||||||||||||||||||||||||||||||
Sbjct: 474  gactccacaggtaatctggatgtggtggta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_a23.g1 MSMg01no330_a23.g1 CHROMAT_FILE:
MSMg01no330_a23.g1 PHD_FILE: MSMg01no330_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:43 2005
         (293 letters)



>mm_chr1_52606943_52607635
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacatacccaagtaagtcaatgccaggttggaggccaagccatgaacatgaaagatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacatacccaagtaagtcaatgccaggttggaggccaagccatgaacatgaaagatgtg 260

                                                                       
Query: 61  agctctaaaaggcaagtgaaaatgaaagttaaaattagcatgttttcaagttttggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctctaaaaggcaagtgaaaatgaaagttaaaattagcatgttttcaagttttggaagt 320

                                                                       
Query: 121 taatgcattctcctgactgatacttagcagatcactaatcaatcaatcaatagtcaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgcattctcctgactgatacttagcagatcactaatcaatcaatcaatagtcaatac 380

                                                                       
Query: 181 agaaaaatataaagtatagtgaatactatagtgggtcaaaaagaagatactttgagatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaaatataaagtatagtgaatactatagtgggtcaaaaagaagatactttgagatgg 440

                                                                
Query: 241 taattgaaagtatacctttcattatctgtggctttcttctagatctgacatct 293
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattgaaagtagacctttcattatctgtggctttcttctagatctgacatct 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)