Query= MSMg01no330_c23.b1 MSMg01no330_c23.b1 CHROMAT_FILE:
MSMg01no330_c23.b1 PHD_FILE: MSMg01no330_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:51 2005
(319 letters)
>mm_chr1_23049395_23050120
Length = 726
Score = 536 bits (277), Expect = e-157
Identities = 309/323 (95%), Gaps = 9/323 (2%)
Strand = Plus / Minus
Query: 5 gaattctctgcttatcc-c-atgtgtttttcccctctagaattctgttctttcaggctct 62
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctctgctta-ccacaatgtgtttttcccctctagaattctgttctttcaggctct 468
Query: 63 gtctttgttggtaacactcaagtgctttttaagagatggtgttgttctctctgggctcta 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 467 gtctttgttggtaacgttcaagtgctttttaagagatggtgttgttctctctgggctcca 408
Query: 123 tctctgttggaagctcagcaaggaccctgaagaccaccagtactttctttgtgtttgatc 182
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 407 tctctgttggaagctcagcaaggaccctgaagaccactggtactttctttgtgtttgatc 348
Query: 183 caactt------ttgtacttttgtgccagagaaacattggtcacagaataaacactggaa 236
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caacttttgtacttgtacttttgtgccagagaaacattggtcacagaataaacactggaa 288
Query: 237 tcagccagtccatctttattcaaagggaaattttagttctttttctttttgctattgtat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcagccagtccatctttattcaaagggaaattttagttctttttctttttgctattgtat 228
Query: 297 tttggattctaaaatgtagattt 319
|||||||||||||||||||||||
Sbjct: 227 tttggattctaaaatgtagattt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 726
Length adjustment: 9
Effective length of query: 310
Effective length of database: 717
Effective search space: 222270
Effective search space used: 222270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_c23.g1 MSMg01no330_c23.g1 CHROMAT_FILE:
MSMg01no330_c23.g1 PHD_FILE: MSMg01no330_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:51 2005
(305 letters)
>mm_chr1_22884681_22885385
Length = 705
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%)
Strand = Plus / Plus
Query: 1 cacaccctgtcagtttatttcacatccccaaagaagcatttctttcaaatagatcacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaccctgtcagtttatttcacatccccaaagaagcatttctttcaaatagatcacata 260
Query: 61 atttctgtcaaattactttgcatacaattatattatgctattataaataagtataaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctgtcaaattactttgcatacaattatattatgctattataaataagtataaagtt 320
Query: 121 gttttcaaaagatgtattgttgaaaagtataaacccaaatttactcgaataaataatatc 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gttttcaaaagatgtattgttgaaaagtataaacccaaattcactcgaataaataatatt 380
Query: 181 ggcatgaagatacaggggtttgcgtgaaaaaacaagacttcaatagaatgttggaatatt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcatgaagatacaggggtttgcatgaaaaaacaagacttcaatagaatgttggaatatt 440
Query: 241 ataaaaataagcatggctaaaaggttttgcagttttaggggccttctagaattatgttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaaataagcatggctaaaaggttttgcagttttaggggccttctagaattatgttca 500
Query: 301 cataa 305
|||||
Sbjct: 501 cataa 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
