BAC Information

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BAC

Clone NameMSMg01-330F08
Chromosome1 (Build37)
Map Location 196,091,067 - 196,234,915
singlet/doubletdoublet
Overlap genenone
Upstream geneG0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330F08.T7 (MSMg01no330_f08.b1)MSMg01-330F08.TJ (MSMg01no330_f08.g1)
ACCAG446919AG446920
length764741
length of high quality
(start - end)		313 (49 - 361)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no330_f08.b1 PHD_FILE: MSMg01no330_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:01 2005CHROMAT_FILE: MSMg01no330_f08.g1 PHD_FILE: MSMg01no330_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,091,067 - 196,091,375)(196,234,626 - 196,234,915)
sequence
GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGGTTCCTAAACATCATGTTCAGGTGACAGGAATTGGTTTG
GGAGGAAGGTTTCTGATTCTTAACCCTGAAGAAACAGGAGTGGTTTGCCC
AAATAATAGAAGTCTACCAACTACCTTCCAAAATACTTGGCAGAGCTGAG
CCAGTGCATGGCTCATGCTTGAGGCTACTGTTGGTTTAGTTGTGGGTTTA
CTTCGGTATTTAAAACAAGCATAACATGAATTACTTGGTGTTCGGGTATG
TTCTATATAAAACAAAAACAAAATACGATCATAAAACAGTACTGGCTCAC
AAACCCAGAATGTTAATAATCCCCCNACCACGCCTAATAAGAACTGAATT
GAAGTGAATGAGCAACACTCCTTGAGATAAAAAAAAGATCCATCTCTATG
GAACTTGAGAGACCAACAATTTGAGAGAGAGAGAGAGAGAGGGAGAGGGA
GAGTTATATTTTACCCCCCTTCCCCTCTTTTTTTAACTTCATTACCCCTT
TTTATCTATTTTTTTTTTAATATACTCCTTCCTTTATTATCTTTTCTCCA
CTCCTCATCTTCTCCTTCTTGCGACTCATTTATTATATCCGCTCGCGATG
ACTTGTTCTATAATTTTTAATTCGCGACAATCTTTTTACTCCTTCCCTTT
CCTCTTCTCCTCCTAATTATATATACCCACTACATATTTCGCCCCTATCC
ATCTCTATTTCTTC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATACAGCTCAATGCTGACTTTGA
ACTCATGGCAATCCTTCCACAGCCCGCTCACTGCTGGGATAACAGGCATC
AACTTGAAAGTTGATGCTTCATGAAAGAATGCATTAGTGAATTTGCTACT
AAAGTTTAAGAGTCTTCCTGTAGATCTTACCATCTTTTATTAAAGCTGAT
ATTTAGGGTCTGGATAGGAAACATTCCTGAGAGATCACATATTGAAGGCT
AGGTCCTCAGTTGGTGGCACTGGCAGTATCTATATCATGAAGGTGCTAAT
AGCAATGGATGCATTGTTTAGTTCCTGACCGCACTGAGGTATTAACAAGA
ACAGCCTGATAGAAGGAGATGGGTCAGGAAAAGATCTATATTCCACTCTT
GCTCCTGTATACTATGAGGTGAGCCACTTTTTCTATTGCACAGCAATGAT
GCCTCAGAAGACACTACTCTGAAGCAGAAGAGCCAAGAGACCAATGGATT
AAAGTCCAAATCTTCCTCCCTTAAGGAGTTTATCTTAAGTATTTTGTCAT
AGGAACAGAAGGCTGCCTAGCACAGTGTGTTGTAGTGAAAAAAAATGTTA
ACTACAGACCTATATTTGGTTTTTGCCGATTTCCTTTTAAAATGAAGAGT
TCCAATGTCCCGTTTCATGGAAAAATTGTGAGTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_f08.b1 MSMg01no330_f08.b1 CHROMAT_FILE:
MSMg01no330_f08.b1 PHD_FILE: MSMg01no330_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:01 2005
         (313 letters)



>mm_chr1_196090863_196091575
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggttcctaaacatcatgttcaggtgacaggaattggtttgggaggaaggttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggttcctaaacatcatgttcaggtgacaggaattggtttgggaggaaggttt 264

                                                                       
Query: 65  ctgattcttaaccctgaagaaacaggagtggtttgcccaaataatagaagtctaccaact 124
           |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ctgattcagaaccctgaagaaacaggagtggttttcccaaataatagaagtctaccaact 324

                                                                       
Query: 125 accttccaaaatacttggcagagctgagccagtgcatggctcatgcttgaggctactgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accttccaaaatacttggcagagctgagccagtgcatggctcatgcttgaggctactgtt 384

                                                                       
Query: 185 ggtttagttgtgggtttacttcggtatttaaaacaagcataacatgaattacttggtgtt 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ggtttagttgtgggtttacttcggtacttaaaacaagcataacatgaattacttggtgtt 444

                                                                       
Query: 245 cgggtatgttctatataaaacaaaaacaaaatacgatcataaaacagtactggctcacaa 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtatgttctatataaaacaaaaacaaaatacgatcataaaacagtactggctcacaa 504

                    
Query: 305 acccagaat 313
           |||||||||
Sbjct: 505 acccagaat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no330_f08.g1 MSMg01no330_f08.g1 CHROMAT_FILE:
MSMg01no330_f08.g1 PHD_FILE: MSMg01no330_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:01 2005
         (290 letters)



>mm_chr1_196234459_196235148
          Length = 690

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatacagctcaatgctgactttgaactcatggcaatccttccacagcccgctcactgc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||
Sbjct: 457 actatacagctcaatgctgactttgaactcatagcaatccttccacagtatgctcactgc 398

                                                                       
Query: 61  tgggataacaggcatcaacttgaaagttgatgcttcatgaaagaatgcattagtgaattt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgggataacaggtatcaacttgaaagttgatgcttcatgaaagaatgcattagtgaattt 338

                                                                       
Query: 121 gctactaaagtttaagagtcttcctgtagatcttaccatcttttattaaagctgatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 337 gctactaaagtttaagagtcttcctgtagatcttaccatcttttactaaagctgatagtt 278

                                                                       
Query: 181 agggtctggataggaaacattcctgagagatcacatattgaaggctaggtcctcagttgg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agggtctggataggaaatattcctgagagatcacatattgaaggctaggtcctcagttgg 218

                                                             
Query: 241 tggcactggcagtatctatatcatgaaggtgctaatagcaatggatgcat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tggcactggcagtatctatatcatgaaggtgctaatagcaatggatgcat 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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