Query= MSMg01no330_f19.b1 MSMg01no330_f19.b1 CHROMAT_FILE:
MSMg01no330_f19.b1 PHD_FILE: MSMg01no330_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:03 2005
(320 letters)
>mm_chr1_181247785_181248503
Length = 719
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 5 gaattcataaactattttagtataactttaaatttgtagggaaaccatagctgagcagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaactattttagtataactttaaatttgtagggaaaccatagctgagcagaa 264
Query: 65 ccagcttttaatatgcagcctaaggcttggctagattcctgagattctcgtatgttctat 124
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct: 265 ccagcttttaatatgcagcccaaggcttgactagattcctgagattctcgtatgttctgt 324
Query: 125 tcttgttgctttgaggccttactagaacaggctggatttgcagtcaactcacccctgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgttgctttgaggccttactagaacaggctggatttgcagtcaactcacccctgcag 384
Query: 185 tttgtgcacggtctggttcttccagaagggtggaacacaagaagaggagagtaagagact 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tttgtgcacggtctggttcttccagaagggcggaacacaagaagaggagagtaagagact 444
Query: 245 ctgagcttccaaaggggaagtgtctaaaatcacaggagtcagatataagaatatagaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagcttccaaaggggaagtgtctaaaatcacaggagtcagatataagaatatagaaaa 504
Query: 305 aagggagac 313
|||| ||||
Sbjct: 505 aagg-agac 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_f19.g1 MSMg01no330_f19.g1 CHROMAT_FILE:
MSMg01no330_f19.g1 PHD_FILE: MSMg01no330_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:03 2005
(291 letters)
>mm_chr1_181411620_181412310
Length = 691
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Minus
Query: 1 actctgtagaccaagctgacctcgaactcagaaatctgcctgcctctgcctcccaagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actctgtagaccaagctgacctcgaactcagaaatctgcctgcctctgcctcccaagtac 598
Query: 61 tgggattaaaggcgtgcgccacccctgcctggtggtgacagatattttaatggaagcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgggattaaaggcgtgcgccacccctgcctggtggtgacagatattttaatggaagcatt 538
Query: 121 taatatttaatttaattattaattaattattaatatttaataattatggcagaagctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taatatttaatttaattattaattaattattaatatttaataattatggcagaagctggg 478
Query: 181 aaggactacctccagctgttgtggtcaggtagagcagtgttttgctttccagtgggagcg 240
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 477 aaggactacctccagctgttgtgatcaggtagagcagtgttttgccttccagtgggagcg 418
Query: 241 gctgaggggtattcagcccaggctcctaggagatgactggactgatgctc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctgaggggtattcagcccaggctcctaggagatgactggactgatgctc 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
