Query= MSMg01no330_l14.b1 MSMg01no330_l14.b1 CHROMAT_FILE:
MSMg01no330_l14.b1 PHD_FILE: MSMg01no330_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:30 2005
(316 letters)
>mm_chr1_160228691_160229402
Length = 712
Score = 484 bits (250), Expect = e-141
Identities = 294/312 (94%), Gaps = 8/312 (2%)
Strand = Plus / Plus
Query: 5 gaattccagtgaaaacctctgtctcaagagaaaaaaaagaagaagaggaaaaagggcaga 64
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccagtgaaaacatctgtctcaagagaaaaaaa--aagaagaggaaaaagggcaga 262
Query: 65 tggcgtctgttctctc--ttctctccacatgtgtctccatatatgcagtactgtgaggtc 122
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cggcgcctgttctctctgttctctccacatgtgtctccatatatgcagtactgtgaggta 322
Query: 123 atagatttgaattactttagatgatacaaagtttgttacatggccatagggaagcaaagc 182
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 atagatttgaattactttagatgatacaaagtttgttacatggccataggaaagcaaagc 382
Query: 183 aaacacaagaagcctctgcaacttctcctatcctgccaagggtcttcatgttttctagag 242
||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 aaacaca----gcctttgcaacttctcctatcctgccaagggtcttcatgctttctagag 438
Query: 243 aaaatcaggatgctattctgggaggaaaaaagaggctttcatgacagtttctggaacaga 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aaaatcaggatgctattctgggaggaaaaaagaggcaaccatgacagtttctggaacaga 498
Query: 303 gcagtattgatc 314
||||||||||||
Sbjct: 499 gcagtattgatc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 712
Length adjustment: 9
Effective length of query: 307
Effective length of database: 703
Effective search space: 215821
Effective search space used: 215821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_l14.g1 MSMg01no330_l14.g1 CHROMAT_FILE:
MSMg01no330_l14.g1 PHD_FILE: MSMg01no330_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:30 2005
(291 letters)
>mm_chr1_160373268_160373958
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 tgaatgattttgttttcttttaaaatttttattgagatattttatgttgctttagaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 491 tgaatgattttgttttcttttaaaatttttattgagatattttatgttgttttagaagga 432
Query: 61 caaatgttttaataaaaatcatacaagcattacttagagaatacagattgttagctgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaatgttttaataaaaatcatacaagcattacttagagaatacagattgttagctgcct 372
Query: 121 ttatgataactaatatgcatgctccttgtgttctacctgtcaagctgccagagctattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttatgataactaatatgcatgctccttgtgttctacctgtcaagctgccagagctattac 312
Query: 181 ataaatataagatggtatagttgaaaggaactaaagaaaatgcatctaccctcaactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ataaatataagatggtatagttgaaaggaactaaagaaaatgcatctaccctcaactttt 252
Query: 241 taaaacaaattttttacgggaaaaaaaatcttcaaaagaaaccttagagat 291
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaaaaaaattttttacgggaaaaaaaatcttcaaaagaaaccttagagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
