BAC Information

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BAC

Clone NameMSMg01-330O01
Chromosome1 (Build37)
Map Location 161,785,169 - 161,785,480
singlet/doubletsinglet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O01.T7 (MSMg01no330_o01.b1)MSMg01-330O01.TJ (MSMg01no330_o01.g1)
ACCAG447317AG447318
length789856
length of high quality
(start - end)
320 (40 - 359)---
definitionCHROMAT_FILE: MSMg01no330_o01.b1 PHD_FILE: MSMg01no330_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:41 2005CHROMAT_FILE: MSMg01no330_o01.g1 PHD_FILE: MSMg01no330_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTAAACCTCTTTTGAGATGCTAAACCACAGTTGCAAAATAAAATCGCTGT
CATCAAATATACATTTAGCCCCCTTTTGACATAAATGCTGAGACCAGCAA
ATGGTTTTTGTTTGGTTTTGTTTTAATGAGAAACACCTAGAGTCCCTTGT
GAACGTTCACCCCATGACAGTGGTCAGCTCAGGAACTGGTGAGTGAGCTG
TTTAATGCTACCTAAGAGTGGATGGACAAGGTTCCCTGGAATTCAGTGAG
ATGTGTGAAGACTTCTCATCATCATTGTTCAGCTCTGTTGAGACAAGTTG
CCCAATCTCNGTCNTTTGACANNACTTGCCCTCTGGACCAAAACACAGAC
TGGAACTGCCTTCCAGGGTGCTCAATAAAAAAACTGACTAGGTCTCACAA
TGAATGCTGTAAAGGAGTGAGGTTGCAAACACTTGGCACTCCCTACCCAC
TTCATTGCATGCATCACTTTCATTGTTCGTTTTATAGTTCTGTATTGTTT
GGTTTGATAGCAATGACTGACACCTTCATTGACCATTAAACCTTCCCTCA
CCATTATCACTTGCACCACAGGGTGACGGCATAATGCTGTCCCTCCTGTT
CCTATGTGAAAAGATAGAAATTCACTTGTCTGAAATGAAGAAAAATAAAA
GGCCTTTAATGATTCCTAAATGCCCTTGTTTTAAATCAACCCTTCTTCTG
GGCATTCATTTAACTTCTTGTTTTTTCTTTAAATAAATT
TTTTTGTCTTTNCCCCNCCAACGGGGGAAGGAGAAGGAGAAAAAGAAGAA
AGGGGAGGACAGGAGAAGAATGGNTAGGGGAGNGGANNGNNNNNNNNNNG
GGGTNGCGAAAAAAGGGGNGNGNNNGNNGNNNNGGGNNNNGGGGGGGGNG
GGGAGTTTTTTCGCGGGAAGGAAGGGGAANNANAGAGAGGAAAAGAGAAG
GGGANGNGGGAGAGAGAAGAAAGGGGGAGANAAAGGGGAGAGGGGGGGGG
NAGGGGAAAAAAGGAGGGGAGGAGGGGAAAGAGGAGAGGAAGGGGTTTTT
ANGAGAAAAAGAGGAAAGGAAAAGAGAAGAGAAGTGAGGAGGGGGAGAAG
NGAGAAAGAGTTTTAGTGTGTTGAGAAGAGAGAAGAAGAGGAGGAGAAAA
GAAGTTATGTGTGTTCGAAAAAAAAGAGAAGAAAAAGATAAAAAGGCAGA
AAGGAGAATAGAGGTGGGAAGAAAAAGAAAAAAAAGGAGGGGGGGGGGGG
GAAGGAGTAGAAGGTGAGAGAAAAAAAGGAGAGGGAGAGAAAAGAAATGG
AGGGAAGAGAGGGGAGGGGGGAGAGAGGGGGAAGTGGGAGAGGAAAAGAG
GGGAAGAGAGAGGAGAAGGAGGAGAGGGGGGGAGAATGGGAAGAAAGGGG
TAAAAAAATATGGAAAGGGAAGAGAGGGGGGAGGAGGGGGGATGAATGTG
GGGTAGGAAGGAAGGAGGAGGGAATAGGGGTATATGTTTGTAAGAGGGGG
GANGAGGTGGAAGGGGAGAAGGAGGGGAAAGGGGAAGGGGGGAGGAGAGA
GAAAGAGAAAGAGATGGGGGTGGATGGAAAGAGAGAATAATTAGATATAG
GGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o01.b1 MSMg01no330_o01.b1 CHROMAT_FILE:
MSMg01no330_o01.b1 PHD_FILE: MSMg01no330_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:41 2005
         (320 letters)



>mm_chr1_161784965_161785684
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 305/315 (96%), Gaps = 6/315 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaaacctcttttgagatgctaaaccacagttgcaaaataaaatcgctgtcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaacctcttttgagatgctaaaccacagttgcaaaataaaatcgctgtcat 264

                                                                       
Query: 65  caaatatacatt---tagcccccttttgacataaatgctgagaccagcaaatggtttttg 121
           |||||||||| |   ||| |   |||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaatatacaatgagtagtc---ttttgacataaatgctgagaccagcaaatggtttttg 321

                                                                       
Query: 122 tttggttttgttttaatgagaaacacctagagtcccttgtgaacgttcaccccatgacag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttggttttgttttaatgagaaacacctagagtcccttgtgaacgttcaccccatgacag 381

                                                                       
Query: 182 tggtcagctcaggaactggtgagtgagctgtttaatgctacctaagagtggatggacaag 241
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 tggtcagctcaggaactggtgagtgagctgttgaatgctacctaagagtggatggacaag 441

                                                                       
Query: 242 gttccctggaattcagtgagatgtgtgaagacttctcatcatcattgttcagctctgttg 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 gttccctggaattcagtgagatgtgtgaagacttctcagcatcattgttcagctctgttg 501

                          
Query: 302 agacaagttgcccaa 316
           |||||||||||||||
Sbjct: 502 agacaagttgcccaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)