BAC Information

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BAC

Clone NameMSMg01-330O11
Chromosome1 (Build37)
Map Location 125,954,490 - 125,954,778
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666983, Dpp10
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O11.T7 (MSMg01no330_o11.b1)MSMg01-330O11.TJ (MSMg01no330_o11.g1)
ACCAG447337AG447338
length768775
length of high quality
(start - end)
305 (124 - 428)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no330_o11.b1 PHD_FILE: MSMg01no330_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005CHROMAT_FILE: MSMg01no330_o11.g1 PHD_FILE: MSMg01no330_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCATTTTTCTCATGAAGCTTGCAGTCTGTAGTTTGTGGTTTTTAGTTTA
CTTGTATTCTTTGTTTTGCCCATTTTGGATCTGTTCCTATTGCCTGTGTC
TCTCTAGCACAGGGTATTGCTCTGTATTTATTGAACAGTACATAAAGTAT
CACATGTGGAAGGAATGAGGCATTGCATAGAAATATTCAGTAGAATTTAA
AGGGATTAAGTTACTGACTCCAACTGATCTCAACTGAACAGGAGAGCAAA
CAGTACTGCAAATATACCATTATTAAATTATAGCCCCATGTTGATTTCAA
CACTTATAGCTTATATTTGTTGCATGACACTTCTTTCAACCCATTGTCTA
TTTTTAACAAATGATTACCATAGCACACACTCATATGTGCATATTGCTCT
GAGCCAGAGGCACAGAAAAATACATAAGATTAAATTTGTTCAATAGCATA
GACTTGTACAATTTGACTACATGATAAATCCAAGGGTATGAAGGGTTGTT
GTTCCACAGTTTTTCTAAATGTAGGTCAAACAAGCAGGTTGAATACAGGG
TAGGAAACCGTATCTAGTGCTTCATGGACCTCAGAGGGTGATTGTGAATG
TCTGCTGGGCGAGCCAGTAAGAACTACCAGGCCGTTTACTTGGGAAGGAA
AAATGTGTGGGAAAAAGAGAAGGGGTACGTCACGTGATTACAATGATGTT
AAGCCTTTGATTAATACT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACCCTTTTCTCTGAGGCCTGGGTGCC
TTTTATCACCTCAATCTTTGTACCCCATCTGATCATTTCTCCTAAGTTTG
CCAGGTGTACTTATTAAAACTGCAAGTTCAGTTGAAACTGTAGATTCCAA
ACTTGAAATGTTCCTGTAGTAAAAATGCACATATACTGATTATTTGTAAG
TCAAATTTAGATAGAAGTCATAGGTTCTCTTTAAAAGCTGATTACTGCTG
TTGAGTCACCATCACTATGTAAGTCTTAATCCTTCCTCTGAGAAATAGGT
TCAAGGAGATATATTAGGATAGTTGCCCCANAACCAACCCCTTAGTGGGA
AATGTTCCACACTGGATCGTGTATTTGAAGAAAAAAAAAAACTGTCTGAG
AGGGTATGAAACTACTGGGAGATAGATCTGAGCTGAAGGAAGTCTGTTAC
TGGGGATGGACTTCTGCAGCTTATATACAGCTCTCTTCCTGGTTCCCAGC
CTGGCCTCCAGCTACAATTTCGATACCTTCCCTTTCATGATAGATTCTAT
CCTTCTTGAACTATAATCCAAAATAAGCACTTCTCTCCTCAAAGTTGCTT
ATAATAATGCCTTAAAAAAAAAAGTGAAAGGGTTTCTTTTCCTTTTACTT
TTTTTTTAAATATTGTTTTTTACCTGAAAAAGTTTTGCACTTGAATTTAC
TTTTTTCTGGTACAATTGAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o11.g1 MSMg01no330_o11.g1 CHROMAT_FILE:
MSMg01no330_o11.g1 PHD_FILE: MSMg01no330_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:43 2005
         (289 letters)



>mm_chr1_125954290_125954978
          Length = 689

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccttttctctgaggcctgggtgccttttatcacctcaatctttgtaccccatctgat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 489 cacccttttctccgaggcctgggtgccttttatcacctcaatctttgtacaagatctgat 430

                                                                       
Query: 61  catttctcctaagtttgccaggtgtacttattaaaactgcaagttcagttgaaactgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 catttctcctaagtttgccaggtgtacttattaaaactgcaagttcagttgaaactgtag 370

                                                                       
Query: 121 attccaaacttgaaatgttcctgtagtaaaaatgcacatatactgattatttgtaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 attccaaacttgaaatgttcctgtagtaaaaatgcacatatactgattatttgtaagtca 310

                                                                       
Query: 181 aatttagatagaagtcataggttctctttaaaagctgattactgctgttgagtcaccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aatttagatagaagtcataggttctctttaaaagctgattactgctgttgagtcaccatc 250

                                                            
Query: 241 actatgtaagtcttaatccttcctctgagaaataggttcaaggagatat 289
           ||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 249 actatgtaagtccaaatccttcctctgagaaataggttcaaggagatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)