ATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATCCGCGGAATT
CCTGGGTGTTCTCGAAATAATGACTTGTATAGTTGCATAGACATGTTTGG
AAAACACATTGATGACACAGTCAATAACAACAAAGGTGTGTGTGAGGTCT
AGGGAGGTGGTTCAAACAAGACAGTGGTGATAGTGCAACAAGAAGGTCCT
GAGTTTAGTCCTCAGGAGATTATATGTATATAACCATTAAGGTTATATAT
ATAATCTTAGCACTAGAAAGGCAGAAATAGGCAAATATGCAGATCCCAGG
TGCTTGTTGGATAGTCTCATTGAGTTGGTGAGCCACTAGGGTACTTAGAT
ACTGTGGCAAAAAAAAAAAAAAAAAAAAGGAGCGATGAGAGAGTTAAAGA
GTGACACACATACACACACATCTTCAGAGAGAAACAAAGGAAGGGAGGAA
GGAAAGCAGGCAGAAAGACTGCTAACAAAGGTCTGATTCCAGCACACCCA
TATTGAAGTGATTCTGAGAGTCCATTACACATGCTTTGGACACTTGAATC
TTCTGAGAAACAACAGAAAGTCTCTGAAGGCTAGCGTATTGTCCCTTTAA
CCAGCTTGTTTCTGCCTCTATGTCTCAGCCTTTGCTTATGAGCTAACAGT
ATGTGTGCTAGGAATTAAAGTAAGATGTGCATCAGGGATCTTGGTGTACA
GAAAGTGTAGAACAAAGCGAGTATCCCAGCAAGCN

ATGCAGTGGGAGGCCCGGGGGCGCCTGGTTTCCCACCCGCNNGACCNANA
GAAGGTAGCAGGCACCCCGGGATCTCACTTGGTAAGGGAAATAGACACTG
GAGGAAGATGTAGCCCCCAAACTGTTGTGGGAGAGGGTGTGAGGAGTGGA
ACAGTGCTGCCCCTCCGGTGAGGCCCAGCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACATTCTCCCCCCCCTCCCCCTCCCCTCCCCCCTTTTTTC
CCACCCCCCCCCCTCCCCCCCTTCCCCCTCCCCCCCCCTCCCCACCCCCC
CCCCCCCCTTTTGGTAATTTCGCCCCCCCCCGCCCCCCCCCCCCCCCCCA
CCCATTTTTTCCCCCCCCCCCCCAGCAGCAGCGGCCCCAACAACCACCCC
CCGCCGACCCCCCTCCCCCCCCCCCCCTTCCTTTTTCCCCCCTTTCTCCC
CTTTCTCCCCCCTTATCCCCCCCCTTCCCCCCTTTCCCCCCCCCCCCTTT
TTTACCCGCCCCCCCCCTCTCCTCCTTTCCCCCCCCCCCCTTTTCCATCC
TCCCCCCTCCCCCCCCCACATTATTTCCCCCTCACCCCCCCCCCCCCCTT
TACCTTCCCCTCCCCCCCCCCCTCTTCCCCCCCCTCCCCCTTCCCATTTC
CTTCCCCCCCCCCCCCCCTTCCCTTTTTCCCCCCTTCCCTTCCTCCCCCT
TCTTCCCCTCTCTCTTCTCTCCCCCCCCCCTATTTCCCCCCCCTCCTTTT
CCCTCTTCCCCTCTCTTCCCCCCCCTCCCCCCCCCCTTTCTTCCGCCTCG
CCCCG

Query= MSMg01no331_b03.b1 MSMg01no331_b03.b1 CHROMAT_FILE:
MSMg01no331_b03.b1 PHD_FILE: MSMg01no331_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:55 2005
         (686 letters)



>mm_chr1_125312470_125313555
          Length = 1086

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/460 (97%), Gaps = 10/460 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  taggcaaatatgcagatcccaggtgcttgttggatagtctcattgagttggtgagccact 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 taggcaaatatgcagatcccaggtgcttgttggatagtctcattgagttggtgagccact 1027

                                                                        
Query: 297  agggtacttagatactgtggc----------aaaaaaaaaaaaaaaaaaaaggagcgatg 346
            |||||||||||||||||||||          |||||||||||||||||||||||||||||
Sbjct: 1026 agggtacttagatactgtggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggagcgatg 967

                                                                        
Query: 347  agagagttaaagagtgacacacatacacacacatcttcagagagaaacaaaggaagggag 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  agagagttaaagagtgacacacatacacacacatcttcagagagaaacaaaggaagggag 907

                                                                        
Query: 407  gaaggaaagcaggcagaaagactgctaacaaaggtctgattccagcacacccatattgaa 466
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 906  gaaggaaagcaggcagaaagactgttaacaaaggtctgattccagcacacccatactgaa 847

                                                                        
Query: 467  gtgattctgagagtccattacacatgctttggacacttgaatcttctgagaaacaacaga 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  gtgattctgagagtccattacacatgctttggacacttgaatcttctgagaaacaacaga 787

                                                                        
Query: 527  aagtctctgaaggctagcgtattgtccctttaaccagcttgtttctgcctctatgtctca 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  aagtctctgaaggctagcgtattgtccctttaaccagcttgtttctgcctctatgtctca 727

                                                                        
Query: 587  gcctttgcttatgagctaacagtatgtgtgctaggaattaaagtaagatgtgcatcaggg 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  gcctttgcttatgagctaacagtatgtgtgctaggaattaaagtaagatgtgcatcaggg 667

                                                    
Query: 647  atcttggtgtacagaaagtgtagaacaaagcgagtatccc 686
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  atcttggtgtacagaaagtgtagaacaaagcgagtatccc 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)