Query= MSMg01no331_k21.b1 MSMg01no331_k21.b1 CHROMAT_FILE:
MSMg01no331_k21.b1 PHD_FILE: MSMg01no331_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
(535 letters)
>mm_chr1_194551452_194552386
Length = 935
Score = 930 bits (481), Expect = 0.0
Identities = 515/535 (96%), Gaps = 14/535 (2%)
Strand = Plus / Plus
Query: 1 gataggagatactgatttcctacagaagtcctcagagttccacacatgcacatgcataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gataggagatactgatttcctacagaagtcctcagagttccacacatgcacatgcataca 274
Query: 61 catgtgcacacatatgcatacgcacacgagctcacacacaaacacgcacacatgcacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 catgtgcacacatatgcatacgcacacgagctcacacacaaacacgcacacatgcacaca 334
Query: 121 cacaaacacacacaagtacacacacacatacacacaagcacatgcatacacacaagcaca 180
||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 cacaagcacacacaagtacacacacacatacac--------------acacacaagcaca 380
Query: 181 tgcacacacacatacaaatacataaataagaaatttaaagtcaaacattctaacacaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacacacatacaaatacataaataagaaatttaaagtcaaacattctaacacaagt 440
Query: 241 taatccaaagactaactcaggactcacatgctgggaaataatgcaggaagatattaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatccaaagactaactcaggactcacatgctgggaaataatgcaggaagatattaaagt 500
Query: 301 ctttgtttcccataatcaaaccattcagtttcttcaaacctgcaactccccactcaggag 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 ctttgtttcccataatcaaaccattcagtttcttcaaacctgcaactcataattcaggag 560
Query: 361 agcctgaaatctgagcaaggtgctctggcattgaaagatgtcatattataacatggccct 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctgaaatctgagcgaggtgctctggcattgaaagatgtcatattataacatggccct 620
Query: 421 agccacactgcagccattttactattctatgttcacaataatacaagatgggcaaccact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccacactgcagccattttactattctatgttcacaataatacaagatgggcaaccact 680
Query: 481 gccagaaaacaccagtcatcacccattagactctgagttacttttgatcgtacat 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccagaaaacaccagtcatcacccattagactctgagttacttttgatcgtacat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_k21.g1 MSMg01no331_k21.g1 CHROMAT_FILE:
MSMg01no331_k21.g1 PHD_FILE: MSMg01no331_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
(661 letters)
>mm_chr1_194722920_194723980
Length = 1061
Score = 1224 bits (633), Expect = 0.0
Identities = 654/661 (98%)
Strand = Plus / Minus
Query: 1 gggccaagagatgtccaaatgcaagacatccacccgcagagggcagccaaatccggtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gggccaagagatgtccaaatgcaagacatccacccgcagagggcagccaaatccggtgta 802
Query: 61 caaggaaacttttgtttttcaagtggccttgtttcagctttctgacgtgactctgatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaggaaacttttgtttttcaagtggccttgtttcagctttctgacgtgactctgatact 742
Query: 121 gtctgtgtataacaggcggagcatgaaaaggaaggagatgataggctggatttccttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtctgtgtataacaggcggagcatgaaaaggaaggagatgataggctggatttccttagg 682
Query: 181 tctgaacagctctggggaggaggagctcagacactggactgcaatgaaggagtcgaaggg 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaaacagctctggggaggaggagctcagacactggactgcaatgaaggagtcgaaggg 622
Query: 241 acagcaagtgtgtttgtggcacgcactgctggagtcctgaggaagtcggaagatggctgc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 acagcaagtgtgcaggtggcacgcactgctggagtcctgaggaagtcggaagacggctgc 562
Query: 301 aagcccagcactgcctcagaggagccgttccctggagagtcctcttcaacaccctaccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcccagcactgcctcagaggagccgttccctggagagtcctcttcaacaccctaccac 502
Query: 361 aacacttcacatcagcgagggaccatccagtgctgcctgaggggaaggaagctttgcctc 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgcttcacatcagcgagggaccatccagtgctgcctgaggggaaggaagctttgcctc 442
Query: 421 tggtagagcgagctcacatgagaaaccaagaaacttgtgtccttaatgttcagcagccct 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tggtagagcgagctcacatgagaaaccaagaaacttgtgtccttaatgctcagcagccct 382
Query: 481 ccagaaattgaattgcatactctttatttgaacttgattttcttagtgaaagagctagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaaattgaattgcatactctttatttgaacttgattttcttagtgaaagagctagga 322
Query: 541 attccgtggagattgtggctttaaaccagagtttccattgcagcactacatatcatcacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccgtggagattgtggctttaaaccagagtttccattgcagcactacatatcatcacc 262
Query: 601 cacatgctgtccatgagacatctctatggccagtccttgggtggatctcagtgagcactc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgctgtccatgagacatctctatggccagtccttgggtggatctcagtgagcactc 202
Query: 661 c 661
|
Sbjct: 201 c 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
