Query= MSMg01no331_n13.b1 MSMg01no331_n13.b1 CHROMAT_FILE:
MSMg01no331_n13.b1 PHD_FILE: MSMg01no331_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:49 2005
(530 letters)
>mm_chr1_188523615_188524543
Length = 929
Score = 932 bits (482), Expect = 0.0
Identities = 515/526 (97%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 5 gaattctactcctattcactattttaaaaagtaatagcaacaacaaaatatctttatgat 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattctactcctagt-aatattttaaaaagtaatagcaacaacaaaatatctttatgat 671
Query: 65 caaaggatattaaaataaaatcatcaaatagagaataatcagaatagaatatggattggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 670 caaaggatattaaaataaaatcatcaaatagagaataatcagaatagaatatggactggg 611
Query: 125 ctactttgtatgacatgttctttattattgtgatattgaagctcctacattcgaaacaac 184
||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 610 ctactttgtatgacatgttttttattgttgtgatattgaagctcctacatttgaaacaac 551
Query: 185 caacattcccattcatttgccttcagtaatggggttggtccctcattcaccaggaatgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caacattcccattcatttgccttcagtaatggggttggtccctcattcaccaggaatgcc 491
Query: 245 aagtcagcacatagaaaacaaaaagaacccgaggaattatcttggattttcctttcaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagtcagcacatagaaaacaaaaagaacccgaggaattatcttggattttcctttcaaat 431
Query: 305 agaataagctttgtgttaatgaagagtggaatctgcagcctgggcaagcaaagacagtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agaataagctttgtgttaatgaagagtggaatctgcagcctgggcaagcaaagacagtga 371
Query: 365 cttgccatgccccctggttctatctctgaatcaggtgggctgaagtgcacagcgtggaaa 424
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttgccatgtcggctggttctatctctgaatcaggtgggctgaagtgcacagcgtggaaa 311
Query: 425 catcacaaagaggtagccttggtagttctttcacatgaaggctaaacacttaatgctaag 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 catcacaaagagttagccttggtagttctttcacatgaaggctaaacacttaatgctaag 251
Query: 485 caattctccctctctggtcctcctgtaatttccaagtgaaattgcg 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caattctccctctctggtcctcctgtaatttccaagtgaaattgcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_n13.g1 MSMg01no331_n13.g1 CHROMAT_FILE:
MSMg01no331_n13.g1 PHD_FILE: MSMg01no331_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:49 2005
(470 letters)
>mm_chr1_188345740_188346609
Length = 870
Score = 690 bits (357), Expect = 0.0
Identities = 439/473 (92%), Gaps = 13/473 (2%)
Strand = Plus / Plus
Query: 1 tttaaaatcaagcaggagagatgttctttgtattctttctgtttggctactagggcattg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 208 tttaaaatcaagcaggagagatgttctttgtattctttctgtttggctaatagggaattg 267
Query: 61 actattaagggtcctccctttcctctatataaggaaggcagaagttaaacgtcacagata 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actattaagggtccttcctttcctctatataaggaaggcagaagttaaacgtcacagata 327
Query: 121 gtgctcacctttatcaccccaacaatggcaccatggaatctaccccttgtctaacactag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgctcacctttatcaccccaacaatggcaccatggaatctaccccttgtctaacactag 387
Query: 181 ctttccccatgcggttcccttctctccctgtcactccagaaacccaaaatgctcctcctt 240
|||| ||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 388 ctttgcccttgcggttcccttccctccctgtcaccccagaaacccaaaatgttcctcctt 447
Query: 241 tgctttattttttattgaaatctactgatgtgttagaagctgtctgggtgcatgttccaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 448 tgctttatactttattgaaatctactgatgtgttagaagctgtctgggtgcacgttccaa 507
Query: 301 gcaccccaagttcctctgtgctgggtgcttatctgtgtgtgcc---ccccccacgctaat 357
|||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct: 508 gcaccccaagttcctccgtgctgggtgcttatctgtgtgtgccttgct----atgctaat 563
Query: 358 gactttaacttgctttccttcagttaatgtcccttttattagttcaagctagaagacttc 417
||||| ||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct: 564 gactt------gctttccttcagttaatgtcccttttattagttcaagttggaggacttc 617
Query: 418 taccactgaatgagcttaaggtggggagagggtaaatggtttttctctttcct 470
| ||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 618 aatcactgaatgagcttaaggtggggagagggcaaatggttttcctctttcct 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
