BAC Information

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BAC

Clone NameMSMg01-332G14
Chromosome1 (Build37)
Map Location 99,466,989 - 99,467,671
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G14.T7 (MSMg01no332_g14.b1)MSMg01-332G14.TJ (MSMg01no332_g14.g1)
ACCAG448452AG448453
length1,2881,296
length of high quality
(start - end)
---654 (135 - 788)
definitionCHROMAT_FILE: MSMg01no332_g14.b1 PHD_FILE: MSMg01no332_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:49 2005CHROMAT_FILE: MSMg01no332_g14.g1 PHD_FILE: MSMg01no332_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCNNNNNNNCCGACCTTTGNNNNCCATTGGNGCTAAGACTCCTAAG
GGAGAGGATCCGCGGAATTCATTTTAAAAANGGCCCTACCTATCCCCTGC
TTTTGANNATGTGGTTATATTTTCCCCTCACACAGCCCNAACNNCAGGNA
NNCNAGAGGGGNNCGGNCNCCNGAGCGGCAGGNCCGCACCAGAANANACN
NAACCAGNGAGAGNCAGGNGCANNCNNNACNANCCANNCNNCGGNANGGC
GCCCNANGCGANGNAAGNNCGGGNAACNCCAGGNAACGGACAGCAGGGGG
CAGGGGGCNGGNGGGGNAANNCACCANCCAAACCNAAGGCCGGACGGNCA
GGCAACGNNGGGAAGCAAGGCACCGGAACNCNGNCCCAAGCNCAGAGGGA
CGACGGGGGGGCNACGGGGGACNAAGGCCAACAGGGACANNNAAAAAGAA
NGGNNANGGAAANAAAANAANAANAANCANCNCGGGGCCCNAACAACACN
AAANAAGGNNNCAGAAGAAANNCNAGGNANNNNNNGANNNNANGNGNNCG
NGGGGGCAGACNNGGAAAGAANNCNAANNGCAANCNNGACANNGNGNGAN
ANNCNNAANACAGNACCACAAAGACCNAACNCANNNNACCNGAAGAAANN
CANAANCNNNAANNNAAACNCANAANNNCCANGGANNGACACCCAAAAAG
CAAGGCAAGNGGGNNCCCCCAAACAGNNNNGAAAAGAGCAGACNNNNGCA
AACCNGGNNNNGNNNNGNNNNGGNNNGGNNNNAGNNNNNNGAGACAGGGN
NCCCCNGNGNAGCCCGGGCGGNCCGGGAACNCACCCGGNAGACCAGGCGG
GCCCCGAACCCAGAAANCCACCCGCCCCCCAAGGGCGGGGANAAAGGNGG
GCGCCACCACGCCCGGGGAACCNGGCCAACNAACACCCCCGGGGNACACA
AGAAAAAGGGGNNNCNAAACCGCAAAACCCACGCCCAAAGNNGAGAAAAA
CCCCCCCGAGAAAAAGAGGAAAAAAACCGGAAGNAAAAAAAACCACCCCC
GGGGGGNCCAAAAGGGGCCCGGGGAAAAAAAAAGCGAACCAAAGCCACCC
AAAAAAACCCCCAAAACGGAAACGGGGGAGGNAAAAAANGAAGGGGGGCA
AGGGAAAGAAAAAGAACCGGGAGGCCGACAAAAACGGGAAGAACCCGCCA
CCAAACGGGGGNNGGGNGGNGGGGGGGNNCAAAAAACGGAAAGGANACNG
AACCACCCGGCGCNACGGGAAGAANCAGAAAAGAAGAA
CCCTTCCTTTTNNAAAAACATGCGATGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAAAGCCCTTTCACTTA
CCAAATACTGACTTGTTTCCCTTATAACACGATTCAAATTGAGAGTCACA
GTGTCCTTTTTCTAACTTTTCAACTTATCTTTATCTTGATAGAATGTATG
TCAGCATTTCTAATTATGTGATAAACATAAAGGGTTTATTTCCTCTAAAT
CCACAAGGAAGGAACTATGTGTGAGATTCATGAGGACAGTGAACTCTGTT
AACTCAAATTACTTTTCCATTTCTCAGAACCACAGGTAATTTTTCCAAAC
AAATCTTTTGAAGCAAACAGGCCTCGCTTCCACACTGAGCCCATGTTGAG
AAGACTACAGTTTTTACCCTGACTTTTTATTGGCCCTGTCTTTGCCGATA
TCTCAAAAAAAAAAAAAAGTGTTCATTTTAGTTGATTAACAAAAAGGCAG
CTGAAATGCTTAGGATAATAGAATAATAAGGGGCTGGCAGCTTTTTCCCC
TGCTAGATAAACATGCCTCACAGAAGGCTTATTAACTGCCTCATACCTAT
GGCGTCAGCTGTTGGAGGGAGCTTTGATAACAGCATGAATGTCAAAACTC
AGCTGCCGACACTGAGCTGTCAGCTTTCAAAATTCAGTGGAGAGCACCAG
TCGGGCATGAGTTCCAAGGAGTAACAGATCTGCCCTACGAAACTGACAGC
TTATCCCCGGCTTTGAAAAGCCTTGCTTTCTTTGCAGACCCTGGCCATGC
GCACGCAGCTCTGAGCTGTGAAGGCAGGGCTAGAGGGCCTGCTCTCANAA
AGAAGCACATGGACTATGTGGATACTTGCTACGTGATAGTTCTTGAGACC
TGTAGAAAATGAAATGAAACTCTGCCCCACTGCTGATTGAAACCGGGCAT
CCAGCACTTACGGTGTTCTAACCCAACTCCTTCGGGAGAAGAAAAAACAA
AAAGGCCTCTCTAAAAGTTGCACTTTCTCAATGGCTTACTCTCTAAGGAA
AAACACTTCCTCCATTAATGGCACCATTTTATCACAAGCTTTCCACATAC
CCAAATCTTTTTATCTTTCAAAAAAATAATTCATTTTGTTGGAAAATCAT
GGGGGGGCTCCGGTCCATAAACCCCATTATTGCCAATATTTGGGGGAATT
TATTCCTTTTTCAAGTTTTTTATTTACTACTCTCTCTTTCTACTCCCTTA
TACTNATATCTCAAAACAGAGACTGTGCGCCCTCCCACTATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g14.g1 MSMg01no332_g14.g1 CHROMAT_FILE:
MSMg01no332_g14.g1 PHD_FILE: MSMg01no332_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:49 2005
         (654 letters)



>mm_chr1_99466818_99467871
          Length = 1054

 Score = 1046 bits (541), Expect = 0.0
 Identities = 634/683 (92%), Gaps = 29/683 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattgagagtcacagtgtcctttttctaacttttcaacttatctttatcttgatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaattgagagtcacagtgtcctttttctaacttttcaacttatctttatcttgatagaa 231

                                                                       
Query: 61  tgtatgtcagcatttctaattatgtga-------------taaacataaagggtttattt 107
           |||||||||||||||||||||||||||             |||||||| |||||||||||
Sbjct: 232 tgtatgtcagcatttctaattatgtgagctctatcctggataaacatagagggtttattt 291

                                                                       
Query: 108 cctctaaatccacaaggaaggaactatgtgtgagattcatgaggacagtgaactctgtta 167
           ||||||| | |||  ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 292 cctctaagttcacggggaagaaactatgtgtaagattcatgaggacagtgaactctgtta 351

                                                                       
Query: 168 actcaaattacttttccatttctcagaaccacaggtaatttttccaaacaaatcttttga 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 actcaaattacttttccatttctcagaaccacaggtaatttttccaaacaaatcttttga 411

                                                                       
Query: 228 agcaaacaggcctcgcttccacactgagcccatgttgagaagactacagtttttaccctg 287
           |||||||||||||| | ||||||||||||||||||||||||||||||| |  | ||||||
Sbjct: 412 agcaaacaggcctcacgtccacactgagcccatgttgagaagactacaatcctaaccctg 471

                                                                       
Query: 288 actttttattggccctgtctttgccgatatctcaaaaaaaaaaaaaa------------- 334
            ||||||| ||||||| ||||||||||||||||||||||||||||||             
Sbjct: 472 gctttttactggccctctctttgccgatatctcaaaaaaaaaaaaaaaaaaaaaaaaaaa 531

                                                                       
Query: 335 ---gtgttcattttagttgattaacaaaaaggcagctgaaatgcttaggataatagaata 391
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaagtgttcattttagttgattaacaaaaaggcagctgaaatgcttaggataatagaata 591

                                                                       
Query: 392 ataaggggctggcagctttttcccctgctagataaacatgcctcacagaaggcttattaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ataaggggctggcagctttttcccctgctagataaacatgcctcacagaaggcttattaa 651

                                                                       
Query: 452 ctgcctcatacctatggcgtcagctgttggagggagctttgataacagcatgaatgtcaa 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctgcctcatacctatggcgtcagctgttggagggagctttgataacagcatgaatgtcaa 711

                                                                       
Query: 512 aactcagctgccgacactgagctgtcagctttcaaaattcagtggagagcaccagtcggg 571
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 712 aactcagctcccgacactgagctgtcagctttcaaaattcagtggagagcaccaatcggg 771

                                                                       
Query: 572 catgagttccaaggagtaacagatctgccctacgaaactgacagcttatccccggctttg 631
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cataagttccaaggagtaacagatctgccctacgaaactgacagcttatccccggctttg 831

                                  
Query: 632 aaaagccttgctttctttgcaga 654
            ||||||||||||||||||||||
Sbjct: 832 gaaagccttgctttctttgcaga 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)