BAC Information

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BAC

Clone NameMSMg01-332I21
Chromosome1 (Build37)
Map Location 47,703,822 - 47,704,515
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a10, EG227061
Downstream geneLOC666869, LOC546734, LOC674566, LOC100041936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332I21.T7 (MSMg01no332_i21.b1)MSMg01-332I21.TJ (MSMg01no332_i21.g1)
ACCAG448557AG448558
length1,2221,266
length of high quality
(start - end)
685 (93 - 777)691 (141 - 831)
definitionCHROMAT_FILE: MSMg01no332_i21.b1 PHD_FILE: MSMg01no332_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:07 2005CHROMAT_FILE: MSMg01no332_i21.g1 PHD_FILE: MSMg01no332_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGATCTATGNTNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCTCCTACATGTATGTGCTCTACACTATAATTAGTGCCAT
TATCATTGCTATTTTTGTCCCTTATAGTTTGGAAAAGTCAGTGAGAATAT
ATAACCTCAGTGTTCTATTTCCTGACTGAATCAATAGACTAGATGCTTGT
GTCCTTCCATAACTTGTATATTGAAATCCAATTCCTGTTAGAGATGGCTT
GGGAAATGATTAGGTCATAAAGAGACAGCCTCATGAATGGATTTAGAGCT
TAGATGATATGAGGGCAATTGGATTGCTGCATCTATCGCCTCATTGTTTG
CTGGAAGTGAGTTGGCTAATTTGTCTGACTAACACAGGTGTCCTCTTCCT
AATACATCCTTCCTTAGATATGTGTATAACTCCAAAAGCTATGCATTTGG
TGGAAATGGACATATGCTCAAATATACAGGACTATTCTTCAATCAAGGGT
ATATCAATAACTGTCAACCTTTGCTGGAATGTACACAGACAGCTCTTAAA
CAAAATCCCAATGAGGCGCCTCCCTGCTCAATGTGAAGGCACAGTGGGAA
GATGGTTGTGATTAGCAAGAAAAGGGTCTTGCCAGACATAGGATTCACTA
GTTTCTTGCTCTAGTACTTCCAGACTCCAGAAGAGTAAAAAATACTAGCT
TCTTTTTTTTTTTAATGGAGATTCATTGTGTTTATTTATAGCAACTGCAT
AACAAGCTTGTACATAGGATGATTGGAGTATCACAGCATAATTTTTTTTA
ATTAGGGATTTTCCTCGTTTACATTTTCAATGCTATCCCAAAAGGGCCCC
CTACACCACCCCCCCCAAANNNNTAANAACCCANTTCCCCTTTTTTTTTC
TGGGATTCCCCTGGGATGGGGGGAAAAAAAATTTGAAGGNCAAGGGGGCT
TTCTTTCTTTTGTTGGGCGAATAAGGCCCCTTTTTTTATTTTTTTTGTTA
AAAAAAAAAAAACCCGCGACCGGGGGGNGTTTTTATGTTGTTCCCCTTTA
AAGATGGGGAGCCCTTATACTCTCGGGGAATTTTTTATATCCTTCCTTGG
GGCCGGGGGGGCCCCCNAAAAGGAAGGGAAATCACTTCTGGTTTGTAGCC
CGGCGATTCCCCCANAAAAAAAAAAATCTTTAAGGAAAAAAAAATTTTTT
TTNATTAAAAAAAAACTTCGAA
NCGGCTCTTTNNNNNAACCAAGTGAGNCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATATAGGTTCTGNTCNTTGA
CATTAATGGTTTTTATAACCCTTTAAATGATGTGNGCAGNAGGAGAAGGC
CACAGGGAAAGACCACATAAACTTATAGNAGGAAAAGTCTTTATCAGTGT
TTGCTCACGTGTAGCAAAATGCATCTGTATATGCCCACATGCTGCAGCTT
TTATAGATTTCTATTTTAAGGAACCACTTGGCATTAGGGCTATTGTTTAC
TCAATAATCACTTATCTTCTATGCCACTGCGTTTGCCTGGGCTCCTCAGT
GGTTTTGGTTAGGGAAAAACTGTGAAGAGATGTGTATATCTTCACAAGTG
TGTGATAATTCTTTTTTCTTAAGAAACTACTGATTTACAAAGAAGAAGCT
GTTGGAGCCAAAGAGGTGCAGGTGGGTTCAATAATGATTTGAATGGTTAA
GTCATGAGTGTCATCTCTACTGCTCTGCTTTCTAGAGCTATGTTTGTCAT
TAATTTATAAGAACTTCTTTTTTCCCATTTTTATTAGGTATTTAGCTCAT
TTACATTTCCAATGCTATACCAAAAGTCCCACCCCTACTCCCCTACACAC
CCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATC
TTTTGATACATATGCAGCTAGAGACAATAGCTCCGGGGTACTGCTTAGTT
CATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGT
GATTTCTCCAGTTCCTCCATTGGGGGCCCTGTGGTCCATTAAATAGTTGA
CTGTGAGCATCCCCTTCTGTGTTTGGTAGGCCCTGGCATAGTCTCACAAG
AGAGAGTTATATCTGGGTCCTTTCCCCAAAATCTTGCTAGTGGATGCAAG
GCTGTCCGCGTTTGGAAACTTGATCTTGGGAATGGACTCTTGGAAATGGG
AAATACCAAAAAGGGCCATCTCTTTTTTCACCTTTTTCAAATTTTGCGGG
GGGAACTCCCTTCCCGGGGGGTTTTTTTTCCCTCTTTAAAAAGGGGCTAA
GGGCCCCACCCTTGGGCTTCTCCTCCTCTTTGGAGTAAAGGGGTTATGAA
ATTTTACTTTTTACATTTGGAGACTCAACAATTCTGGGGCACAATACCCC
TTTTTCTCGAGAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_i21.g1 MSMg01no332_i21.g1 CHROMAT_FILE:
MSMg01no332_i21.g1 PHD_FILE: MSMg01no332_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:07 2005
         (691 letters)



>mm_chr1_47703620_47704710
          Length = 1091

 Score = 1180 bits (610), Expect = 0.0
 Identities = 670/703 (95%), Gaps = 23/703 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gagaaggccacagggaaagaccacataaacttatagnaggaaaagtctttatcagtgttt 62
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 gagaaggccacagggaaagaccacataaacttatagtaggaaaagtctttatcagtgttt 262

                                                                       
Query: 63  gctcacgtgtagcaaaatgcatctgtatatgcccacatgctgcagcttttatagatttct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctcacgtgtagcaaaatgcatctgtatatgcccacatgctgcagcttttatagatttct 322

                                                                       
Query: 123 attttaaggaaccacttggcattagggctattgtttactcaataatcacttatcttctat 182
           ||||||||||| ||||||||||||         |||||||||||||||||||||||||||
Sbjct: 323 attttaaggaatcacttggcatta---------tttactcaataatcacttatcttctat 373

                                                                       
Query: 183 gccactgcgtttgcctgggctcctcagtggttttggttagggaaaaactgtgaagagatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gccactgcgtttgcctgggctcctcagtggttttggttagggaaaaactgtgaagagatg 433

                                                                       
Query: 243 tgtatatcttcacaagtgtgtgataattcttttttcttaagaaactactgatttacaaag 302
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 434 tgtatatcttcacaagtgtgtgataattctgatttcttaagaaactactgatttacaaag 493

                                                                       
Query: 303 aagaagctgttggagccaaagaggtgcaggtgggttcaataatgatttgaatggttaagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagaagctgttggagccaaagaggtgcaggtgggttcaataatgatttgaatggttaagt 553

                                                                       
Query: 363 catgagtgtcatctctactgctctgctttctagagctatgtttgtcattaatttataaga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 catgagtgtcatctctactgctctgctttctagagctatgtttgtcattaatttataaga 613

                                                                       
Query: 423 acttcttttttc-ccattttt-attaggtatttagctcatttacatttccaatgctatac 480
           |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acttcttttttttccattttttattaggtatttagctcatttacatttccaatgctatac 673

                                                                       
Query: 481 caaaagtccc------------acccctactcccctacacacccactccccctttttggc 528
           ||||||||||            ||||| |||||||||| | |||||||||||||||||||
Sbjct: 674 caaaagtcccccatacccacccacccccactcccctacccgcccactccccctttttggc 733

                                                                       
Query: 529 cctggcgttcccctgtactggggcatataaagtttgcaagtccaatgggcctctctttgc 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cctggcgttcccctgtactggggcatataaagtttgcaagtccaatgggcctctctttgc 793

                                                                       
Query: 589 agtgatggccgactaggccatcttttgatacatatgcagctagagacaatagctccgggg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 794 agtgatggccgactaggccatcttttgatacatatgcagctagagacaagagctccgggg 853

                                                      
Query: 649 tactgcttagttcatattgttgttccacctatagggttgcagt 691
           |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 854 tactgcttagttcacattgttgttccacctatagggttgcagt 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)