MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-332L22
Chromosome	1 (Build37)
Map Location	192,381,546 - 192,382,129
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
Downstream gene	LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cenpf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108000 MGI:1313302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpn14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19250 MGI:102467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042438 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042438
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Smyd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226830 MGI:1915889
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19130 MGI:97772
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039394 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039394
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG666975 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666975 MGI:3648155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Rps6kc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320119 MGI:2443419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Angel2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52477 MGI:1196310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vash2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226841 MGI:2444826
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039445 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039445
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC666987 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666987
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	9630055N22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226844 MGI:2444881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700022P22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75558 MGI:1922808
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein

name	Tatdn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68972 MGI:1916222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 35 ESTs, 2 Proteins

name	Nsl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381318 MGI:2685830
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130211I03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381319 MGI:1925491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933417M04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619288 MGI:3588202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 5 Proteins

name	Atf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11910 MGI:109384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nenf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66208 MGI:1913458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310028N02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66950 MGI:1914200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp2r5a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226849 MGI:2388479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039501 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667044 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667044
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Dtl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76843 MGI:1924093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cenpf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486916 GeneID:108000 MGI:1313302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centromere protein F transcript_id : NM_001081363.1

name	Ptpn14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110825985 GeneID:19250 MGI:102467
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 14 transcript_id : NM_008976.2

name	Smyd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30840983 GeneID:226830 MGI:1915889
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SET and MYND domain containing 2 transcript_id : NM_026796.1

name	Prox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543512 GeneID:19130 MGI:97772
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prospero-related homeobox 1 transcript_id : NM_008937.2

name	EG666975 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364753 GeneID:666975 MGI:3648155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG666975 transcript_id : XM_987363.1

name	Rps6kc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52546980 GeneID:320119 MGI:2443419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S6 kinase polypeptide 1 transcript_id : NM_178775.3

name	Angel2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70794812 GeneID:52477 MGI:1196310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angel homolog 2 (Drosophila) transcript_id : NM_021421.3

name	Vash2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450246 GeneID:226841 MGI:2444826
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vasohibin 2 transcript_id : NM_144879.1

name	LOC100039445 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149247224 GeneID:100039445
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039445 transcript_id : XM_001472897.1

name	9630055N22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486924 GeneID:226844 MGI:2444881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9630055N22 gene transcript_id : NM_001081259.1

name	1700022P22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149247242 GeneID:75558 MGI:1922808
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein product : RIKEN cDNA 1700022P22 gene transcript_id : XM_886605.3

name	Tatdn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149247247 GeneID:68972 MGI:1916222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 35 ESTs, 2 Proteins product : TatD DNase domain containing 3 transcript_id : XM_129661.10

name	Nsl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56711342 GeneID:381318 MGI:2685830
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) transcript_id : NM_198654.2

name	9130211I03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364287 GeneID:381319 MGI:1925491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9130211I03 gene transcript_id : NM_030060.2

name	4933417M04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364757 GeneID:619288 MGI:3588202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 5 Proteins product : RIKEN cDNA 4933417M04 gene transcript_id : XM_886705.2

name	Atf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542153 GeneID:11910 MGI:109384
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activating transcription factor 3 transcript_id : NM_007498.2

name	Nenf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377999 GeneID:66208 MGI:1913458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuron derived neurotrophic factor transcript_id : NM_025424.2

name	2310028N02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802089 GeneID:66950 MGI:1914200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310028N02 gene transcript_id : NM_025864.3

name	Ppp2r5a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130061 GeneID:226849 MGI:2388479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2, regulatory subunit B (B56), alpha isoform transcript_id : NM_144880.4

name	Dtl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061464 GeneID:76843 MGI:1924093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : denticleless homolog (Drosophila) transcript_id : NM_029766.2

name	Cenpf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486917 GeneID:108000 MGI:1313302
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence ISS]; GO:0000776 - kinetochore [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0045120 - pronucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0016202 - regulation of striated muscle development [Evidence IDA] codon_start : 1 note : centromere autoantigen F product : leucine, glutamic acid, lysine family 1 protein protein_id : NP_001074832.1

name	Ptpn14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110825986 CCDS:CCDS15609.1 GeneID:19250 MGI:102467
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 product : protein tyrosine phosphatase, non-receptor type 14 protein_id : NP_033002.2

name	Smyd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30840984 GeneID:226830 MGI:1915889
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : SET and MYND domain containing 2 protein_id : NP_081072.1

name	Prox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679483 GeneID:19130 MGI:97772
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0001709 - cell fate determination [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0045446 - endothelial cell differentiation [Evidence IMP]; GO:0001945 - lymph vessel development [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : prospero-related homeobox 1 protein_id : NP_032963.1

name	EG666975 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364754 GeneID:666975 MGI:3648155
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992457.1

name	Rps6kc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52546981 CCDS:CCDS15611.1 GeneID:320119 MGI:2443419
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : ribosomal protein S6 kinase, 52kDa, polypeptide 1 protein_id : NP_848890.2

name	Angel2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70794813 CCDS:CCDS15612.1 GeneID:52477 MGI:1196310
definition	GO_function : GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA] codon_start : 1 product : D1Ertd396e protein protein_id : NP_067396.3

name	Vash2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450247 GeneID:226841 MGI:2444826
definition	codon_start : 1 product : vasohibin 2 protein_id : NP_659128.1

name	LOC100039445 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149247225 GeneID:100039445
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472947.1

name	9630055N22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486925 GeneID:226844 MGI:2444881
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC226844 protein_id : NP_001074728.1

name	1700022P22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82883678 GeneID:75558 MGI:1922808
definition	codon_start : 1 product : hypothetical protein LOC75558 protein_id : XP_891698.1

name	Tatdn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149247248 GeneID:68972 MGI:1916222
definition	codon_start : 1 product : TatD DNase domain containing 3 protein_id : XP_129661.4

name	Nsl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56711343 CCDS:CCDS15614.1 GeneID:381318 MGI:2685830
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : similar to DC8/DC31 protein protein_id : NP_941056.2

name	9130211I03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47058956 CCDS:CCDS15615.1 GeneID:381319 MGI:1925491
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : Jun dimerization protein p21SNFT protein_id : NP_084336.1

name	4933417M04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82883683 GeneID:619288 MGI:3588202
definition	codon_start : 1 product : hypothetical protein protein_id : XP_891798.1

name	Atf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542154 CCDS:CCDS15616.1 GeneID:11910 MGI:109384
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0006094 - gluconeogenesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : activating transcription factor 3 protein_id : NP_031524.2

name	Nenf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384818 CCDS:CCDS15618.1 GeneID:66208 MGI:1913458
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0008083 - growth factor activity [Evidence IDA] GO_process : GO:0043410 - positive regulation of MAPKKK cascade [Evidence IDA] codon_start : 1 note : neudesin; Spinal cord injury related protein 10; secreted protein of unknown function product : SCIRP10-related protein protein_id : NP_079700.1

name	2310028N02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385348 CCDS:CCDS15619.1 GeneID:66950 MGI:1914200
definition	codon_start : 1 product : hypothetical protein LOC66950 protein_id : NP_080140.1

name	Ppp2r5a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059051 CCDS:CCDS15620.1 GeneID:226849 MGI:2388479
definition	GO_component : GO:0000159 - protein phosphatase type 2A complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : protein phosphatase 2, regulatory subunit B (B56), alpha isoform protein_id : NP_659129.2

name	Dtl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982955 CCDS:CCDS15621.1 GeneID:76843 MGI:1924093
definition	codon_start : 1 note : retinoic-acid regulated nuclear matrix-associated protein; Meth A ramp product : denticleless homolog protein_id : NP_084042.1

name	LOC100042438 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042438
definition	number : 1 pseudo : _no_value

name	LOC100039394 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039394
definition	number : 1 pseudo : _no_value

name	LOC100039394 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039394
definition	number : 2 pseudo : _no_value

name	LOC100039394 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039394
definition	number : 3 pseudo : _no_value

name	LOC666987 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666987
definition	number : 1 pseudo : _no_value

name	LOC100039501 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039501
definition	number : 1 pseudo : _no_value

name	LOC667044 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667044
definition	number : 1 pseudo : _no_value

name	LOC667044 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667044
definition	number : 2 pseudo : _no_value

name	LOC667044 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667044
definition	number : 3 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:128508
definition	standard_name : D1Mit17

name	(CDS detail)
type	STS
link
xref	UniSTS:158906
definition	standard_name : AI325968

name	(CDS detail)
type	STS
link
xref	UniSTS:234302
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158905
definition	standard_name : D31842

name	(CDS detail)
type	STS
link
xref	UniSTS:234303
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234306
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128771
definition	standard_name : D1Mit409

name	(CDS detail)
type	STS
link
xref	UniSTS:128772
definition	standard_name : D1Mit409.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128450
definition	standard_name : D1Mit117

name	(CDS detail)
type	STS
link
xref	UniSTS:142260
definition	standard_name : D1Mit56

name	(CDS detail)
type	STS
link
xref	UniSTS:496835
definition	standard_name : Prox1

name	(CDS detail)
type	STS
link
xref	UniSTS:122945
definition	standard_name : RH118247

name	(CDS detail)
type	STS
link
xref	UniSTS:128584
definition	standard_name : D1Mit241

name	(CDS detail)
type	STS
link
xref	UniSTS:125609
definition	standard_name : Results_ER_9_5_95_44.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:207271
definition	standard_name : RH126952

name	(CDS detail)
type	STS
link
xref	UniSTS:161175
definition	standard_name : RH124353

name	(CDS detail)
type	STS
link
xref	UniSTS:234304
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128832
definition	standard_name : ND

name	(CDS detail)
type	STS
link
xref	UniSTS:128833
definition	standard_name : D1Mit462.2

name	(CDS detail)
type	STS
link
xref	UniSTS:167270
definition	standard_name : RH127139

name	(CDS detail)
type	STS
link
xref	UniSTS:158907
definition	standard_name : C85134

name	(CDS detail)
type	STS
link
xref	UniSTS:167286
definition	standard_name : AU015293

name	(CDS detail)
type	STS
link
xref	UniSTS:165134
definition	standard_name : AI845692

name	(CDS detail)
type	STS
link
xref	UniSTS:234307
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234309
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234310
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:165133
definition	standard_name : AI451597

name	(CDS detail)
type	STS
link
xref	UniSTS:141125
definition	standard_name : Atf3

name	(CDS detail)
type	STS
link
xref	UniSTS:161818
definition	standard_name : RH124996

name	(CDS detail)
type	STS
link
xref	UniSTS:165135
definition	standard_name : AI118576

name	(CDS detail)
type	STS
link
xref	UniSTS:267867
definition	standard_name : MARC_15687-15688:1013522980:1

name	(CDS detail)
type	STS
link
xref	UniSTS:128645
definition	standard_name : D1Mit292

name	(CDS detail)
type	STS
link
xref	UniSTS:39544
definition	standard_name : SHGC-57254

name	(CDS detail)
type	STS
link
xref	UniSTS:128549
definition	standard_name : D1Mit209

name	(CDS detail)
type	STS
link
xref	UniSTS:210031
definition	standard_name : RH136036

clone name	MSMg01-299B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-332L22.T7 (MSMg01no332_l22.b1)	MSMg01-332L22.TJ (MSMg01no332_l22.g1)
ACC	AG448693	AG448694
length	1,265	1,248
length of high quality (start - end)	530 (131 - 660)	746 (84 - 829)
definition	CHROMAT_FILE: MSMg01no332_l22.b1 PHD_FILE: MSMg01no332_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:31 2005	CHROMAT_FILE: MSMg01no332_l22.g1 PHD_FILE: MSMg01no332_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:32 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NNGGCCGATAGNTNANNNCCATTCGGCCTAAGACTCCTATGGGAGAGGAT CCGCGGAATTCAGCAATGGCACTGGACTCACCTACCCTTAGGTTAAATGA AAGGTGGAGGAGACGCCCTCAAAAATCCCAGCTCTGCTCTTACAGCATGG AGGCCCAAGGATGAGCCTCAAAAGTTCATGTTTTAAAACAAAAACAAACA AACAAACAAAAAACAAAACAAATAAATAAATAAATAAATAGGAAAGAGAT GATAGCTCAGAGGTTAGAGTACTCGCTGTTCTTGAAGAGGACCTGGGGTT TGGTTCCCAGCACCCGTACAGCAGCTTAAAACCATCCATAACTCCAGTTC CAGGGACTTGACACTCTTTTCTGAACCCCATAGGTGCCTTTGTGCCCACA GTGCACACATTTTTGCAAGCAAACATCCATATATAAAATAACTAAGTCTG ATTTTTAAAATGCCAGCTGTGGTGGCACACTTACAATCTTAGGGCTGGGG AAATGGAGAGGGGTGGACCCCTGGGGCGTGATGGTCAGTTCTCCTGGCAC ACTTGGTGAATTCCAGGCCAGTAAGAGACCCTGTCTCAGAAAGACACAAG ATGGATGACATCTGAGGAACAATAGCCAAGACTGTTCTCTAGCCTCTATG TGCACATGGACACACATGCACCTGCTGACATGAGTACCCCTGTACAAATC TGAATGCACACGGGACGCCACACGTGCACACACACATGCCTATATACACC CATTACTACTTGCACACATATACACCCCTGCTGGTGTTCTCTCTTATTCC CATGAACACATATACCCNCCCATGCCTATATACNCNCTTATTATACTGAA CACCCCTGAATGGACACACACCTGAATGGTCTTAANCNGGAAGGAANAAC CNTATGGCTGGGGGNCNCCNNAAAAAAAAANGAGGGCCNNNAAAAAAATT CTTACCCTTTTAAAAGGGGTGTGTTTTNANGGAAAAANAAANNANNNNNN NGNNNTNGNNNTAGGNNTTNGTTTTTTTNAAACCCCCCNGATTNAATTTT NATAAAAAAATATNNNAAATTTTTTTTTAAAAAGGGAACCTTGGAGATNA ATTTTANAANNNNNNNNNNNANANGGNTGGTTTTNAACAAANNCNCCAAA NAAAATNNNATATTNAATTNNTTCNNNTNAAANACNANNNAAATTANNTC NTANNNNNNANTNTNANACNCNATNNNNCACNNNNANANNNNCAAANTAA TANNNANACNNCAAA	NNNGGAGTATNNNNNNNAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGGCTGTGGTTGCCTA CACAAGATCAAACTGGTCATTCCAGTCTGTACTGGGAAGGGATTCATGAA CCTCCACCCCAGCTAAGGGGCTAATGACATTGACGACTGCTAAGGTAGGG AAAGTCAGTTTTCTTAGGGACTATGTTCCAGTGCCTCGTGTGTGTGTGTG TGTGTGTGTGTGTGTTGTAGCAGTAATATGACTTAGTGACTTGTTTAAAA AAGAAGATATTCATGAAAGCTGAGAAAGGCATGTGAAGGGATTCAGAAGT TACAGGGAGGGATGGGGGTGAAATTCTAAATAAAACTGTTACATTAAAAA CAAAGTTGGGTGCATGTGTGTGATCCCAGTGTCTAGAGGCTTGGTGAGTT TCAGGTCTAGCACACATACACTTGAGCATCCACTCCCACATAAACATTCA CAGACATGGACAGACAACACCCCTGCCCCCAAACTTGCTCTACCCACAAA GTCTCATGATCTATTTAAAGTACCAGAGTGAACAGTCATGACATAGGTAA GAAACTATGCAGTGTTAACATGCGTGGTGAACAGTCATAACATAACATAG GTAAGAAACTATACAGTGATAACATGCGTGGTGAACAGTCATAACATAAC ATAGGTAAGAAACTATACAGTGTTAACATGCATGGTGAACAGTCATAACA TAACATAGGTAAGAAACTATACAGTGTTAACATGCGTGGTGAACAGTCAT AACATAACATAGGTAAGAAACTATGCAGTGTTAGCATGCATGGTGAACAG TCATAACATAACATAGGTAAGAAACTATACAGTGTTAACATGCGTGGTGA ACAGTCCTAACATAACATAGGTAAGAAACTATACAGTGTTAACATGCATG GTGAACAGTCCTAACTTAACATAGGTAAGAAACTATTCAGTGTTAACATG CCTGGTGAACAGTCCTAACATAACATAAGTAAAAACTTATGCAGTGTTAA CATGGCGGGGGGAACATCTTAACTATACATAAGTAAAAACTTATGCCCGG TTTAATGGGGGGGGAAACCCCTTTCCTAACCTAGGTAAAAAAATTGCCGG TGTAAATGCCGGGGGGACGTCCCTACTTATCATAGGAGAAAAATTCCCGG GTATTTGCTGGGGGGAAATCCCAACAAAATGAGAAAAAAAATTCCTTG
quality values	Open. Hide. 0 0 3 6 6 7 9 9 10 9 3 0 3 0 3 0 0 0 3 6 6 8 8 9 9 9 8 8 8 8 8 8 8 12 8 8 8 12 8 8 8 21 19 17 24 24 28 30 31 33 33 37 37 30 30 28 26 16 19 9 9 9 17 19 27 14 13 10 23 22 28 23 19 19 9 7 6 10 6 6 6 6 10 11 7 7 6 6 6 8 13 19 27 33 33 39 41 50 53 53 57 57 38 38 36 36 33 41 50 37 37 37 25 23 12 9 11 12 12 11 11 9 9 8 10 8 8 12 11 12 15 21 28 28 33 37 39 44 33 36 36 38 53 53 53 53 53 53 53 53 53 57 57 57 57 59 59 57 57 68 68 68 57 57 46 46 46 46 43 43 43 57 57 68 68 68 68 68 68 68 68 50 51 68 68 57 57 59 44 43 43 43 57 59 59 68 68 68 68 68 59 59 48 48 48 59 59 68 68 68 59 57 57 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 37 43 59 59 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 59 59 59 59 68 68 68 68 57 68 68 57 57 59 59 68 68 68 68 68 68 59 59 52 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 47 47 43 43 47 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 53 50 50 50 42 41 25 25 12 11 11 11 11 13 15 18 12 11 12 28 30 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 48 54 57 59 57 57 57 59 59 59 68 68 68 59 59 48 43 43 43 43 48 47 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 57 57 57 59 59 68 68 68 68 68 59 59 59 59 57 57 48 48 48 57 44 59 59 68 68 68 57 57 57 57 57 57 57 54 57 59 68 68 54 54 54 54 54 54 57 68 68 59 59 43 59 47 54 57 44 44 54 53 48 48 57 57 50 48 48 48 53 48 48 48 50 48 48 57 48 48 41 41 28 32 31 34 34 30 26 14 14 14 27 27 41 59 46 37 37 23 23 11 11 33 33 41 59 43 37 36 41 41 41 39 25 25 22 26 30 30 39 30 30 17 17 22 27 27 43 43 39 47 47 50 50 53 53 47 47 47 53 53 34 25 11 12 12 24 24 26 27 24 22 22 22 28 17 18 30 32 36 28 31 28 37 28 28 28 35 35 30 27 24 27 10 10 12 13 10 22 22 20 18 19 23 16 23 20 23 17 22 11 11 11 23 27 15 12 11 10 10 9 9 13 13 10 15 23 32 31 30 30 23 24 13 15 10 8 11 8 11 11 25 25 18 12 8 8 8 8 10 16 18 19 8 8 8 10 8 7 7 9 21 23 33 33 11 12 11 9 9 9 10 11 12 17 16 20 15 14 8 8 8 12 10 8 6 6 8 11 13 12 12 9 9 9 9 9 9 9 9 11 15 23 18 18 8 15 8 8 8 8 10 10 10 10 10 11 10 10 10 8 8 8 8 8 8 12 11 9 9 8 8 15 8 7 8 12 18 16 21 23 9 9 9 11 9 10 15 12 3 0 3 21 9 9 9 10 8 8 10 10 9 11 11 10 3 0 3 0 3 16 9 11 11 8 8 8 8 11 10 11 8 7 8 8 8 17 19 8 9 9 9 8 8 8 8 17 19 24 24 17 15 17 8 19 13 10 9 9 10 8 8 8 8 8 8 10 3 0 3 0 3 7 7 6 6 6 8 3 0 3 6 6 3 0 3 9 9 9 9 8 6 8 8 8 6 3 0 3 0 3 3 0 0 3 17 13 9 8 8 8 12 3 0 3 8 8 8 9 9 3 0 0 0 3 8 8 7 9 9 9 10 25 15 17 17 22 22 8 7 7 6 7 12 12 24 15 15 8 6 6 8 8 6 6 8 19 19 14 3 0 3 0 3 14 7 9 7 7 3 0 3 6 3 0 0 3 0 0 0 0 0 0 0 3 0 0 0 3 0 3 0 0 0 3 10 21 3 0 0 3 3 0 3 7 7 6 6 8 9 3 0 3 6 6 8 6 9 7 14 3 0 3 8 7 3 0 3 7 7 7 7 3 0 3 9 9 16 10 9 8 8 8 6 8 3 0 0 0 3 8 6 6 8 6 9 7 7 8 8 8 8 8 24 22 25 8 8 6 6 8 8 9 7 9 9 19 22 19 17 3 0 3 7 7 9 7 7 3 0 3 3 0 0 0 0 0 0 0 0 0 0 0 3 0 3 0 3 3 0 3 8 6 7 7 7 3 0 3 11 11 17 23 3 0 0 3 0 3 17 7 7 3 0 3 7 7 17 3 0 0 0 3 6 6 8 3 0 3 7 7 3 0 0 3 14 3 0 0 0 3 0 3 8 3 0 3 3 0 3 0 0 0 3 7 7 7 7 3 0 0 3 3 0 3 3 0 0 0 0 0 0 3 0 3 0 3 0 3 0 3 3 0 3 0 3 3 0 0 0 0 3 17 3 0 0 0 0 3 0 3 0 0 0 0 3 6 7 3 0 3 6 6 6 3 0 0 0 3 0 3 3 0 0 3 21 9 9	Open. Hide. 0 0 0 3 6 6 6 6 6 3 0 0 0 0 0 0 0 3 6 6 6 7 7 6 6 6 6 10 6 6 6 7 8 12 13 8 8 9 8 9 8 12 13 19 9 10 8 11 13 9 12 19 28 30 35 36 36 37 37 35 35 35 35 36 36 36 50 50 50 50 47 37 39 23 18 10 9 9 9 8 8 7 8 13 17 20 25 28 28 28 31 31 35 36 36 36 36 36 42 43 43 57 57 50 50 50 50 50 50 57 50 47 47 47 47 36 41 41 46 46 54 54 47 47 50 50 47 43 47 50 50 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 68 68 46 48 48 48 48 50 68 68 68 68 57 57 57 68 57 57 57 57 57 57 57 68 57 57 57 57 57 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 45 45 45 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 59 59 59 59 68 59 59 59 59 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 68 68 68 68 59 59 54 54 54 57 57 57 57 57 59 59 68 68 59 59 68 68 59 59 59 68 68 68 68 68 57 57 57 59 68 68 57 57 57 68 68 57 59 68 68 68 68 68 59 59 59 59 59 59 59 48 48 48 59 59 59 59 59 59 59 59 59 59 50 50 50 47 41 39 39 39 37 39 44 59 59 59 59 59 47 48 48 47 47 53 53 44 50 59 59 59 59 59 59 44 41 41 44 39 39 41 42 41 41 46 46 46 46 59 59 59 59 59 59 48 48 48 59 59 59 59 47 39 39 39 37 39 39 44 47 47 59 59 47 48 48 48 48 48 48 50 50 50 50 47 47 44 44 41 37 37 41 41 59 59 47 47 46 48 48 40 41 41 41 47 43 41 37 37 41 43 43 43 30 32 37 32 31 37 37 37 37 39 44 59 47 59 39 39 30 30 30 39 39 41 41 44 44 47 47 41 41 37 31 31 25 25 24 19 19 27 27 39 35 17 17 12 12 15 27 27 32 41 43 59 43 41 37 39 41 39 37 39 21 21 15 20 20 32 28 34 22 22 10 10 10 14 21 32 22 22 12 12 11 23 11 10 11 14 18 17 16 14 18 19 22 22 22 22 22 23 29 32 37 35 27 24 14 15 15 30 24 18 21 21 9 9 9 10 9 14 23 26 16 18 13 13 14 15 15 14 14 19 19 25 25 28 32 32 31 20 16 11 11 10 12 12 18 24 23 14 10 11 15 9 8 8 8 8 8 8 8 13 13 23 23 12 10 10 10 12 11 11 13 20 21 24 11 11 11 11 9 9 10 13 14 13 14 19 10 10 11 14 10 9 11 10 13 11 14 11 11 11 8 8 8 8 12 16 16 18 9 9 8 8 8 8 10 15 13 14 13 11 10 11 9 17 12 9 9 8 8 8 8 8 6 6 6 8 8 9 9 9 10 9 9 7 7 7 8 7 7 9 10 10 10 11 15 19 12 14 18 12 16 21 11 11 8 8 6 6 6 8 11 11 11 11 12 9 8 8 8 8 8 8 7 8 8 8 8 10 8 8 8 8 8 8 8 6 7 7 9 9 11 8 9 8 8 8 6 8 8 8 8 10 13 18 10 9 9 8 8 8 8 8 8 8 9 9 9 10 14 7 8 6 6 8 8 9 9 8 10 8 8 8 9 8 12 10 11 10 13 8 7 8 6 6 9 11 19 11 10 9 9 9 11 11 9 9 8 8 8 6 6 6 8 8 8 10 15 9 10 10 17 19 28 10 9 8 8 8 8 9 11 6 6 6 6 8 8 14 9 9 11 9 9 11 8 8 9 7 11 8 7 7 8 8 8 6 6 8 8 8 6 6 8 8 10 10 10 10 8 6 6 6 10 8 15 11 11 10 10 10 10 12 8 8 8 8 8 12 13 9 9 9 8 8 8 8 8 8 10 11 10 13 8 8 8 12 11 11 11 14 9 8 8 6 6 6 6 6 6 8 8 8 10 7 7 10 6 7 7 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no332_l22.g1 MSMg01no332_l22.g1 CHROMAT_FILE:
MSMg01no332_l22.g1 PHD_FILE: MSMg01no332_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:32 2005
         (746 letters)



>mm_chr1_192381345_192382490
          Length = 1146

 Score =  928 bits (480), Expect = 0.0
 Identities = 542/584 (92%), Gaps = 35/584 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggctgtggttgcctacacaagatcaaactggtcattccagtctgtactgggaagggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gtggctgtggttgcctacacaagatcaaactggtcattccagtctgtactgggaagggat 726

                                                                       
Query: 61  tcatgaacctccaccccagctaaggggctaatgacattgacgactgctaaggtagggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tcatgaacctccaccccagctaaggggctaatgacattgacgactgctaaggtagggaaa 666

                                                                       
Query: 121 gtcagttttcttagggactatgttccagtgcctc-----------------------gtg 157
           ||||||||||||||||||||||||||||||||||                       |||
Sbjct: 665 gtcagttttcttagggactatgttccagtgcctctgtgtgtgtgtgtgtgtgtgtgtgtg 606

                                                                       
Query: 158 tgtgtgtgtgtgtgtgtg--tgtgtgttgtagcagtaatatgacttagtgacttgtttaa 215
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtgtgtgtgtgtgtgtgtatgtgtgttgtagcagtaatatgacttagtgacttgtttaa 546

                                                                       
Query: 216 aaaagaagatattcatgaaagctgagaaaggcatgtgaagggattcagaagttacaggga 275
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaaagaagatattcatgaaagttgagaaaggcatgtgaagggattcagaagttacaggga 486

                                                                       
Query: 276 gggatgggggtgaaattctaaataaaactgttacattaaaaacaaagttgggtgcatgtg 335
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gggatgggggcgaaattctaaataaaactgttacattaaaaacaaagttgggtgcatgtg 426

                                                                       
Query: 336 tgtgatcccagtgtctagaggcttggtgagtttcaggtcta----------gcacacata 385
           |||||||||||||||||||||||||||||||||||||||||          |||||||||
Sbjct: 425 tgtgatcccagtgtctagaggcttggtgagtttcaggtctagcctttgtatgcacacata 366

                                                                       
Query: 386 cacttgagcatccactcccacataaacattcacagacatggacagacaacacccctgccc 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 cacttgagcatccactcccacataaacattcacagacatggacagacaacatccctgccc 306

                                                                       
Query: 446 ccaaacttgctctacccacaaagtctcatgatctatttaaagtaccagagtgaacagtca 505
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaaacttgctctacacacaaagtctcatgatctatttaaagtaccagagtgaacagtca 246

                                                       
Query: 506 tgacataggtaagaaactatgcagtgttaacatgcgtggtgaac 549
           | | ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 taatataggtaagaaactatgcagtgttaacatgcatggtgaac 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space:   836096
Effective search space used:   836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information