Query= MSMg01no333_a07.b1 MSMg01no333_a07.b1 CHROMAT_FILE:
MSMg01no333_a07.b1 PHD_FILE: MSMg01no333_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:05 2005
(636 letters)
>mm_chr1_108644930_108645966
Length = 1037
Score = 1170 bits (605), Expect = 0.0
Identities = 620/625 (99%), Gaps = 1/625 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagaccaatttgaa-caatttttttttttttagatcccatggcacccatcatcc 62
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaattcagaccaatttgaataaatttttttttttttagatcccatggcacccatcatcc 566
Query: 63 cagcgttcactggagatcccaacactattgaattagcatcccaattcatagtctgagatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagcgttcactggagatcccaacactattgaattagcatcccaattcatagtctgagatc 506
Query: 123 aaatggtttatgcagaagtgtagtaacctcagataaggcatgtctgtatcaaaggttccc 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaatggtttatgcagaagtgtagtaacttcagataaggcatgtctgtatcaaaggttccc 446
Query: 183 ccaaaacaaagacctggcctttgttcagatggggggaactctaacgtagctgtgactcag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaaacaaagacctggcctttgttcagatggggggaactctaacgtagctgtgactcag 386
Query: 243 cagagaaagctccgaggatcctagacccagataggaaatagctggggatgggtagccaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagaaagctccgaggatcctagacccagataggaaatagctggggatgggtagccaca 326
Query: 303 gagtcagaagaaatgatgtatttcagtggagagggctagaagaacagattggttcccaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtcagaagaaatgatgtatttcagtggagagggctagaagaacagattggttcccaga 266
Query: 363 tggccaggaaataccaggcccttcgaactggggactcaacttctctccagttcagcgaca 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggccaggaaataccaggtccttcgaactggggactcaacttctctccagttcagcgaca 206
Query: 423 tctgataggttatttttccaccaccggtgaaatgagccaatttaagccagattagattag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctgataggttatttttccaccaccggtgaaatgagccaatttaagccagattagattag 146
Query: 483 attaaaggctggtttattgggaagctgctctcaggtgggtgagttcactggccccgagga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 attaaaggctggtttattgggaagctgctctcaggtgggtgagttcactggccccgagga 86
Query: 543 ccaaggccagggaagtcgccataaggacaagggaagagagggacaggaggggagggagag 602
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ccaaggccagggaaatcgccataaggacaagggaagagagggacaggaggggagggagag 26
Query: 603 agaaagagaagctgcacacacagag 627
|||||||||||||||||||||||||
Sbjct: 25 agaaagagaagctgcacacacagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_a07.g1 MSMg01no333_a07.g1 CHROMAT_FILE:
MSMg01no333_a07.g1 PHD_FILE: MSMg01no333_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:05 2005
(350 letters)
>mm_chr1_108584213_108584963
Length = 751
Score = 656 bits (339), Expect = 0.0
Identities = 348/351 (99%), Gaps = 1/351 (0%)
Strand = Plus / Plus
Query: 1 ctaaggcgccgcttcagctcactcacaagaagggcagtggcagcagtgcagtgtggg-aa 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 201 ctaaggcgccgcttcagctcactcacaacaagggcagtggcagcagtgcagtgtgggaaa 260
Query: 60 aaagttagcgccaaccccacggtgggaacttcctgtgagagagccagagccatggaagga 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtaagcgccaaccccacggtgggaacttcctgtgagagagccagagccatggaagga 320
Query: 120 gcgaacaccggctgcctccaggcacagctctcctctcctaaagccaggatgcgcttcact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgaacaccggctgcctccaggcacagctctcctctcctaaagccaggatgcgcttcact 380
Query: 180 gaacagagaaaaacaacccagcgcttcaaggtgagcctctgtttcatagaaggcaatgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacagagaaaaacaacccagcgcttcaaggtgagcctctgtttcatagaaggcaatgga 440
Query: 240 aaagggcaaacctagtcagcgcagatacacaaaggagggccgagaccggctatgtgtagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagggcaaacctagtcagcgcagatacacaaaggagggccgagaccggctatgtgtagg 500
Query: 300 tgggcgcttcctccacccacccgcatcccacccggttcttttcccagctca 350
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggcgcttcctccacccacccgcatcccacccggttcttttcccagctca 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 751
Length adjustment: 9
Effective length of query: 341
Effective length of database: 742
Effective search space: 253022
Effective search space used: 253022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
