BAC Information

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BAC

Clone NameMSMg01-333J22
Chromosome1 (Build37)
Map Location 187,866,453 - 187,867,094
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333J22.T7 (MSMg01no333_j22.b1)MSMg01-333J22.TJ (MSMg01no333_j22.g1)
ACCAG449324AG449325
length712724
length of high quality
(start - end)
154 (75 - 228)643 (74 - 716)
definitionCHROMAT_FILE: MSMg01no333_j22.b1 PHD_FILE: MSMg01no333_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:50 2005CHROMAT_FILE: MSMg01no333_j22.g1 PHD_FILE: MSMg01no333_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGGATCACGNG
GAATTCTACAACAGGATTTCGAAAAGATTCTGTTTCAAAATAAAGATCAA
ATATGATTAGGGCTGTAGCTCATGAGTAGAGTGCTTTCTCTCATCTGCAA
GTTATTGGGTTCAACCCCTGTTATTAGAAAGGAGATCAAGAAGAAAAGAA
AAGAAAATTAATTTACTTGCTAACTATAANNATGNATATNNACAGGAGGG
TATGTACTTGGGAGCACGCTAAGCGGCAGAATCATGAGCACAGCCATGGA
AAGAGTATANGACAATATNAGTCTTGGCAAATATTTTGGCCCGGGGANNA
ATAAGCAATAGAGAAGTCCAATGGGGGTTTGGAAAAAAATTTAAACCCCC
CTAATTAAGGGGGGAGGGGGGAAAAAGTAATTTTTTTTTGNNTTTATAAG
GGGGGCAAAAAGGGGGGCCCCCAAAAAAATATCTTTAAAGGGGGCCCCCT
TGGAGACCCTTTTTGGTGTAACCNNNCCCNCNNNCNNNNNNNNNNNNNNN
NNCCCCCCCNAACACACAACCANNNNCCCCNNNNNNNNNNNNNNNNNNNA
NANNNNNCCCCCNNNNAAAAAACAAAACCCCACNNNNNNNNCCCNNNNNN
ANNNACCCACAACCCAAACCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNC
CCCCCCCCCCCC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGTGGAGCTTTCTGCACCTAGCCTGGT
ACCTCACAAAAGAGAGGCTGCGGGTTTCAGAAATATTTGGCAGAAGGATA
TGACTGAAGAAGTTGGTGATGTGAGTAAGGAACCATTGGGGTGCAGAAGC
GACAATCCCCATGAACCAATGTAGAGTTCTGATAGAACCTCCAATTGTCA
CAACCAGGATGATCTTGAGGCCAGTATATTTTATGAAGTTTATTTTCTGT
GTGATCTAAGCTAAAATAGGTATTAAAGTTTATTCTCTGCCAGATTATTT
TCTCATCTGTAAAATGGCAGTAAATACTGAGACATCAGGTAACTGAATGG
ATTGATCAGAGATCTTTAGAGCCCCACCCCTATGAACAAAATGACATAGG
GAGGTATCACAAACCTTAAAGAGACTATGTAGCTGGCTTCCTCTGGGTAC
AGTTTTCATTAACAAATAGGCACCTTTGTAACTTTCTTGGTTTGTCAGAG
GCTGACGTTACCACAGCTTCGTCTAGGAATGAAATATCACTGCTGTACTT
GGGAGCTGGCTCATGTTGTCAGGCTATTTTGTTGTTGTGACTGACTTTGG
CTTTGTATTTAATGTATTTAATGTTATTATCTCTGTGGGAATATGTCCCA
AATTTATGTGGATGGGTAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_j22.g1 MSMg01no333_j22.g1 CHROMAT_FILE:
MSMg01no333_j22.g1 PHD_FILE: MSMg01no333_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:50 2005
         (643 letters)



>mm_chr1_187866253_187867294
          Length = 1042

 Score = 1145 bits (592), Expect = 0.0
 Identities = 630/648 (97%), Gaps = 11/648 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggagctttctgcacctagcctggtacctcacaaaagagaggctgcgggtttcagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtggagctttctgcacctagcctggtacctcacaaaagagaggctgcgggtttcagaaa 260

                                                                       
Query: 61  tatttggcagaaggatatgactgaagaagttggtgatgtgagtaaggaaccattggggtg 120
           |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 261 tatttggcggaaggatatgactgaagaagttggtgatgcgagtaaggaactattgggttg 320

                                                                       
Query: 121 cagaagcgacaatccccatgaaccaatgtagagttctgatagaacctccaattgtcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagcgacaatccccatgaaccaatgtagagttctgatagaacctccaattgtcacaa 380

                                                                       
Query: 181 ccaggatgatcttgaggccagtatattttatgaagtttattttctgtgtgatctaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggatgatcttgaggccagtatattttatgaagtttattttctgtgtgatctaagcta 440

                                                                       
Query: 241 aaataggtattaaagtttattctctgccagattattttctcatctgtaaaatggcagtaa 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aaataggtattaaagtttattctctgccagattatttcctcatctgtaaaatggcagtaa 500

                                                                       
Query: 301 atactgagacatcaggtaactgaatggattgatcagagatctttagagcccca-----cc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||   |     | 
Sbjct: 501 atactgagacatcaggtaactgaatggattgatcagagatctttagagc---aataatc- 556

                                                                       
Query: 356 cctatgaacaaaatgacatagggaggtatcacaaaccttaaagagactatgtagctggct 415
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 --tatgaacaaaatgacatagggaggtatcacaaaccttaaagagactatgtagctggct 614

                                                                       
Query: 416 tcctctgggtacagttttcattaacaaataggcacctttgtaactttcttggtttgtcag 475
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcctctgggtagagttttcattaacaaataggcacctttgtaactttcttggtttgtcag 674

                                                                       
Query: 476 aggctgacgttaccacagcttcgtctaggaatgaaatatcactgctgtacttgggagctg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aggctgacgttaccacagcttcgtctaggaatgaaatatcactgctgtacttgggagctg 734

                                                                       
Query: 536 gctcatgttgtcaggctattttgttgttgtgactgactttggctttgtatttaatgtatt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gctcatgttgtcaggctattttgttgttgtgactgactttggctttgtatttaatgtatt 794

                                                           
Query: 596 taatgttattatctctgtgggaatatgtcccaaatttatgtggatggg 643
           ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 795 taatgttattatctctgtgggaatacgtcccaaatttatgtggatggg 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space:   653256
Effective search space used:   653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)