Query= MSMg01no333_k17.b1 MSMg01no333_k17.b1 CHROMAT_FILE:
MSMg01no333_k17.b1 PHD_FILE: MSMg01no333_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:54 2005
(582 letters)
>mm_chr1_178955669_178956650
Length = 982
Score = 1015 bits (525), Expect = 0.0
Identities = 572/607 (94%), Gaps = 31/607 (5%)
Strand = Plus / Plus
Query: 4 gaattctacagaacctattcggactccacagtgcttgtagtttttcttcctggtgaccta 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctacagaacccattaggactccacagtgcttgtagtttttcttcctggtgaccta 263
Query: 64 ggtatgactgcaaactcatcttcttaagcaattttagtcaacatttactattgactagct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtatgactgcaaactcatcttcttaagcaattttagtcaacatttactattgactagct 323
Query: 124 cactattttttattttcttatagtaaaaatttaagctagaatagagaaatcaagaaaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactattttttattttcttatagtaaaaatttaagctagaatagagaaatcaagaaaaaa 383
Query: 184 gatgaaaaaccaatgggcagatttgaagacctggttcatcaggaaaacaagaaagaattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatgaaaaaccaatgggcagatttgaagacctggttcatcaggaaaacaagaaagaattt 443
Query: 244 gcaagctgtgggggtaggacaacatatataaatgccctctcttatctcttttcccctgta 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaagctgtgagggtaggacaacatatataaatgccctctcttatctcttttcccctgta 503
Query: 304 tgtgaagggtcacaatgaaccaagccccttcttccctaagtgttctatgactgcagttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgaagggtcacaatgaaccaagccccttcttccctaagtgttctatgactgcagttca 563
Query: 364 caattataaagctcttccttgggtgtggccaagcactagaaagagccatccaagacactc 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 caattataaagctcttccttgggtgtggccaagcactataaagagccatccaagacactc 623
Query: 424 ttgctcatctacaaagtccactgcacactatcctataatcgggatacactagtcagtaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgctcatctacaaagtccactgcacactatcctataatcgggatacactagtcagtaca 683
Query: 484 accttctaaaacatgatttcttttcattttttatttgtgtgtgtgtgtgtgtgtgtg--- 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accttctaaaacatgatttcttttcattttttatttgtgtgtgtgtgtgtgtgtgtgtgt 743
Query: 541 -----------------agagaga-----------agagagaggaagggtgtgtctgtgt 572
||||||| |||||||||||||||||||||||||
Sbjct: 744 gtgtgtgtgtgtgtgtgagagagagagagagagagagagagaggaagggtgtgtctgtgt 803
Query: 573 gtgtgtg 579
|||||||
Sbjct: 804 gtgtgtg 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_k17.g1 MSMg01no333_k17.g1 CHROMAT_FILE:
MSMg01no333_k17.g1 PHD_FILE: MSMg01no333_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:54 2005
(669 letters)
>mm_chr1_179127019_179128085
Length = 1067
Score = 1268 bits (656), Expect = 0.0
Identities = 663/666 (99%), Gaps = 2/666 (0%)
Strand = Plus / Minus
Query: 1 tctgatgtaatagattatcagttcaaaaattaactttggagacttattctggagctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tctgatgtaatagattatcagttcaaaaattaactttggagacttattctggagctgaag 805
Query: 61 actttaaataattttaaaatgataagattgataatgataagaatcttctgagacaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actttaaataattttaaaatgataagattgataatgataagaatcttctgagacaaaaat 745
Query: 121 cttgaacaggcttgtttattttgcagaacttaacaagtatttaaatagagcaaaatagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttgaacaggcttgtttattttgcagaacttaacaagtatttaaatagagcaaaatagaa 685
Query: 181 ctatagagctacagtagctttcattatcaagctataagttggatcatttttttcccttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctatagagctacagtagctttcattatcaagctataagttggatcatttttttcccttaa 625
Query: 241 agtatggcattttttccttttgcatggcgctaacaggtggcattaaatgaagaatgggag 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 agtatggcattttttccttttgcatg--gctaacaggtggcattaaatgaagaatgggag 567
Query: 301 atgacttttattcattaacatagtttaattttgagttagttttgaaatttataagtcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgacttttattcattaacatagtttaattttgagttagttttgaaatttataagtcttg 507
Query: 361 aatgaacttatgcctgaaaaataaggatttgaaaaataaaaagggtttgagatcaagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatgaacttatgcctgaaaaataaggatttgaaaaataaaaagggtttgagatcaagtgt 447
Query: 421 gcttgactgccttactaataggcggagaagtccattttcttcccatggagctttatacat 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcttgactgccttactaataggtggagaagtccattttcttcccatggagctttatacat 387
Query: 481 cctgtcacatagaaacagtttgtcacatgtgtttgtagccagttttagacagatcattga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctgtcacatagaaacagtttgtcacatgtgtttgtagccagttttagacagatcattga 327
Query: 541 ttatatatcattcaggcataaaagataattctgacatccttctttgttccttaaatacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttatatatcattcaggcataaaagataattctgacatccttctttgttccttaaatacct 267
Query: 601 tgcctctataaaatggcatatatattagcttgatcagatcattataaacaagtgccaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgcctctataaaatggcatatatattagcttgatcagatcattataaacaagtgccaagg 207
Query: 661 aggcaa 666
||||||
Sbjct: 206 aggcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1067
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1057
Effective search space: 696563
Effective search space used: 696563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
