Query= MSMg01no333_p06.b1 MSMg01no333_p06.b1 CHROMAT_FILE:
MSMg01no333_p06.b1 PHD_FILE: MSMg01no333_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:14 2005
(355 letters)
>mm_chr1_55347368_55348122
Length = 755
Score = 671 bits (347), Expect = 0.0
Identities = 353/355 (99%)
Strand = Plus / Minus
Query: 1 ccaattttcttctgtgtcatacgttttgccactgagggggaaaatatgtaatataaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ccaattttcttctgtgtcatacgttttgccactgagggggaaaatatgtaatataaacaa 605
Query: 61 cttaagggagaaaggacacattttggccctggtttcagaatattcagtctggctctgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cttaagggagaaaggacacattttggccctggtttcagaatattcagtctggctctgttg 545
Query: 121 attctgcccagtctgttcatctcatggtagatgagaaacagaaaaagagaaaggtatccc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 544 attctgcccagtctgttcatctcatggtagatgagaaacaggaaaagagaaaggtatccc 485
Query: 181 tgtgacaaaatatggccccaaagatccctaatagcctactttttcacctaggccacatct 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtgacaaaatatgaccccaaagatccctaatagcctactttttcacctaggccacatct 425
Query: 241 cataaagtttgcagaacctcccaaaatagtgtcaaaagctggaaaccagtcttcatcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cataaagtttgcagaacctcccaaaatagtgtcaaaagctggaaaccagtcttcatcagt 365
Query: 301 aagactaagaaggatagctcatattcaaactataacataatcttagctatttctt 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aagactaagaaggatagctcatattcaaactataacataatcttagctatttctt 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_p06.g1 MSMg01no333_p06.g1 CHROMAT_FILE:
MSMg01no333_p06.g1 PHD_FILE: MSMg01no333_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:14 2005
(336 letters)
>mm_chr1_55186344_55187079
Length = 736
Score = 629 bits (325), Expect = 0.0
Identities = 334/337 (99%), Gaps = 1/337 (0%)
Strand = Plus / Plus
Query: 1 ctccgttcattcttactattgttgttgtttaaggataaggtctcactacatactcctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctccgttcattcttactattgttgttgtttaaggataaggtctcactacatactcctggc 259
Query: 61 tggccttgaactctctttgtagaccaggcatactctgaactcacagagatcagcctgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggccttgaactctctttgtagaccaggcatactctgaactcacagagatcagcctgtat 319
Query: 121 ctgcctcctgagtgctgggattaaaggcgccactctgccc-gccgcagctcttatgttgg 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 ctgcctcctgagtgctgggattaaaggcgccactctgccccgccgcagctcttatgttgg 379
Query: 180 aacacttggtgttcagcttgagattcgatttggaggttgtgtaattctaaccatggccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacacttggtgttcagcttgagattcgatttggaggttgtgtaattctaaccatggccca 439
Query: 240 gctctgagaattgtctcactttgggcgggtcttgatgcagataccagcttctgcctccag 299
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctctgagaagtggctcactttgggcgggtcttgatgcagataccagcttctgcctccag 499
Query: 300 cttaagacctctgtttctgaaccccatgctcttgaag 336
|||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttaagacctctgtttctgaaccccatgctcttgaag 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
