BAC Information

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BAC

Clone NameMSMg01-334D05
Chromosome1 (Build37)
Map Location 116,376,239 - 116,376,585
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334D05.T7 (MSMg01no334_d05.b1)MSMg01-334D05.TJ (MSMg01no334_d05.g1)
ACCAG449757AG449758
length779733
length of high quality
(start - end)
342 (49 - 390)300 (76 - 375)
definitionCHROMAT_FILE: MSMg01no334_d05.b1 PHD_FILE: MSMg01no334_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:33 2005CHROMAT_FILE: MSMg01no334_d05.g1 PHD_FILE: MSMg01no334_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATAACGCG
GAATTCACCTCTCATATGCTATCTTTAGTATATTATCTTAATATACCTGA
CATTTTATTTATTCATCAGGTAAAAAGTACAAAGTAAATTAGTAATAAAT
TCTACTAGTAATTTACTCTTAATAAAAATTATGGAATAGTAGAATAGTCT
CTTCTTAAATTAAAACAAAAAATAAGATGTATATACTCTCTAATTGGATA
TTCATGGATTTTAATATGAAATTGTAGTTCTCTCTCTCTCTCTCTCTCTC
AGTGTGTGTGTGTGTGTGTGCATCTGTGTGTGTGCATCTGTGTGTGTGTG
TGTGCATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCGTTTTGTTT
GCCNCTTATTTACTCTTCCCTTTCATCTTATTTTTAATTCTTTGTTGTGA
CGGTTAGTTCTTCCATTATAATGACATTTTTTGACTAATATTTTTCTACA
TTTTCCATAATTACTTGTGTCCTAGGTTACTGTTTATTTGTTTGATGGCT
TTTTAAGATTGTTCTGCGTTCCTTTTATTGTTTTGCTTTTCATTACGTGT
TATGTGGGTTCACTCGCTAATATGTGTTATATTTGCTATAAACTTTGTCA
GAAACATAATGGGGAATGATTTATTCCTTTAATCTTTTCATTGTATTCTT
CTTTTTTTTTTATAGTTTATGTTTGTAAGCTTGAACTCTATTTATAAATT
TAATATGTCTACAACATTTTTTCGATTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTATTGCGAGAA
CTATAGAAGGATCTGCCCAAAAACTTTTAGGCAGGAAGACAAATGCTAGA
TATGTAGCTTGAGGCAATAAAATATACCTTTAATCTGGAACACTTTCTGC
TGTAAACCTATATATAAGGGAAGAGAAGAAGGAAGATTTGGCCTTTGCCT
TCTTGCCCTCAGCTTGCCAGCAAATCCATTTTTTCACTGGCACCAGTGCC
TACTTCTTCAAGATTCCAGCAAACAGAGACTAAGACATGGAAGCTTGTGA
ACTGAGCCATGACTGTACTCTATTGTATCTTGACTAATACATACACAAAT
ATATAGAGATGGCGGTTTATTAAAGCTTTATTATAGCTTTTATGATTGAA
ATTTATAAGAAATAGCTTCCTTAACAGGCAACAGTTAGATGTACTAACTG
ATGTATACAGGTTTAATATTATGATTATCGCTTTTCCTGATTGCTCAAAT
GAAAGAGATGCTGAATATTTTGCCTTTCAGTTGATGGCTTGTACTCTGCA
TTGGAATTTTAACCCATATCCCAGGGTGAAAGTGGCTACCGGTTATAGCG
GATAGCGAAAAAGCAGCTTGTTTCCTTATTGGGTGGATGAACTTTCTGCC
TATTTGTTTCTGATTGTTAGATGCCCCCCAAACGGCCACGGAAGTGTTCC
TTTCCCTCAATATTTGTGGAATAATATCCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_d05.b1 MSMg01no334_d05.b1 CHROMAT_FILE:
MSMg01no334_d05.b1 PHD_FILE: MSMg01no334_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:33 2005
         (342 letters)



>mm_chr1_116376038_116376777
          Length = 740

 Score =  555 bits (287), Expect = e-162
 Identities = 328/355 (92%), Gaps = 24/355 (6%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcacctctcatatgctatctttagtatattatcttaatatacctgacattttatt 61
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcacctctcatatgttatctttagtatattatcttaatatacctgacattttatt 261

                                                                       
Query: 62  tattcatcaggtaaaaagtacaaagtaaattagtaataaattctactagtaatttactct 121
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tattcatcaggtaaaaagtaaaaagtaaattagtaataaattctactagtaatttactct 321

                                                                       
Query: 122 taataaaaattatggaatagtagaatagtctcttcttaaattaaaacaaaaaataagatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taataaaaattatggaatagtagaatagtctcttcttaaattaaaacaaaaaataagatg 381

                                                                       
Query: 182 tatatactctctaattggatattcatggattttaatatgaaattgtagttctctctctct 241
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tata--ctctctaattggatattcatggattttaatatgaaattgtagttctctctctct 439

                                                                       
Query: 242 ctctctctctc----------------agtgtgtgtgtgtgtgtgtgcatctgtgtgtgt 285
           |||||||||||                ||||||||||||||||||||  | |||||||||
Sbjct: 440 ctctctctctctctctctctctctctcagtgtgtgtgtgtgtgtgtg--tgtgtgtgtgt 497

                                                                  
Query: 286 gcatctgtgtgtgtgtgtgtgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtt 340
           |||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 498 gcatctgtgtgtgtgtgtgtg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtt 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 740
Length adjustment: 9
Effective length of query: 333
Effective length of database: 731
Effective search space:   243423
Effective search space used:   243423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)