Query= MSMg01no334_g06.b1 MSMg01no334_g06.b1 CHROMAT_FILE:
MSMg01no334_g06.b1 PHD_FILE: MSMg01no334_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:48 2005
(614 letters)
>mm_chr1_17744174_17745187
Length = 1014
Score = 971 bits (502), Expect = 0.0
Identities = 584/616 (94%), Gaps = 12/616 (1%)
Strand = Plus / Plus
Query: 5 gaattcccagca-tttcttacgtttactgagatgatttctagtcagtggggacatatttc 63
|||||||||||| ||| |||| ||||||||||| ||||||||| ||| ||||||||
Sbjct: 205 gaattcccagcagttt-ttacatttactgagatcatttctagtgagt-----catatttc 258
Query: 64 aattttcagaacctccaggtatattccttataagaatccactctataaaaattatttatt 123
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 259 agttttcagaacctccaggtatattccttataagaatccactctgtaaaaatgatttatt 318
Query: 124 atttacctttaagtggttctgacttatatatttgacaaagtatgcatagtttagtgtgtt 183
|||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct: 319 atttacctttaaatggttctaacttatatatttgacaaagtatacacagtttagtgtgtt 378
Query: 184 atatggtattacataaattttggaagtaataaataaagctatttcctgaagaggatatat 243
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 379 atatggtattacacaaattttagaagtaacaaataaagctatttcctgaagaggatatat 438
Query: 244 ctaaattggtaaggataaattcagtttaagtattattactgttattactgatattattag 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctaaattggtaagggtaaattcagtttaagtattattactgttattactgatattattag 498
Query: 304 aa--ctcatggatgttatcacgttcaaggtatttttatatagttataatgttgagtccat 361
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaactcatggatgttatcacgttcgaggtatttttatatagttataatgttgagtccat 558
Query: 362 atactatgtaaaataatgttttgacagttttaagtgcctatttgtgtgggtggaggggca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atactatgtaaaataatgttttgacagttttaagtgcctatttgtgtgggtggaggggca 618
Query: 422 agaatatacacacagagacatacagagacacatagacacacagagagaatatcaattaag 481
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaatatacacacagaaacatacagagacacatagacacacagagagaatatcaattaag 678
Query: 482 aagtaatatt---tttttaaaatatgaattaatagtttctggttttctaaaaatgtactt 538
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagtaatgttgttttttttaaatatgaattaatagtttctggttttctaaaaatgtactt 738
Query: 539 acttattttgaactaaatgtttctatttaaaaacaaacttttggtagctttttaaaattt 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aattattttgaactaaatgtttctatttaaaaacaaacttttggtagctttttaaaattt 798
Query: 599 agggtagccaatcaga 614
||||||||||||||||
Sbjct: 799 agggtagccaatcaga 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_g06.g1 MSMg01no334_g06.g1 CHROMAT_FILE:
MSMg01no334_g06.g1 PHD_FILE: MSMg01no334_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:48 2005
(500 letters)
>mm_chr1_17914786_17915686
Length = 901
Score = 938 bits (485), Expect = 0.0
Identities = 495/499 (99%), Gaps = 3/499 (0%)
Strand = Plus / Minus
Query: 4 gtcttgtgatcttttattactcctgactttcctcattagctccttcaactacatcattgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtcttgtgatcttttattactcctgactttcctcattagctccttcaactacatcattgt 612
Query: 64 attaagtttgctaatttcacaagagtgcaggaaatctgagacttaaaatgctgaatattg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 attaagtttgctaatttcacaagagtgcaggaaatctgagacttaaaatgctgaatattg 552
Query: 124 tatggatgtggattagaaggttttgtcttaaattcctttatacacatcaatggcttcagt 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 tatggatgtggattagaaggttttatcttaaattcctttatacacatcaatggcttcagt 492
Query: 184 gagcttagacatttttgctttctttctcacctactgattctaggggaaatgttacaaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gagcttagacatttttgctttctttctcacctactgattctaggggaaatgttacaaaaa 432
Query: 244 tgacttcttttaatgaaaattttgtggctcattgaccttattttctt--aaaaaaaaatc 301
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 tgacttcttttaatgaaaattttgtggctcattgaccttattttcttaaaaaaaaaaatc 372
Query: 302 attagttaaaggagaatttgtatctataattgccccagttggctcaccaaaaaaaaaaaa 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 attagttaaaggagaatttgtatctataattgccccagttggctcacc-aaaaaaaaaaa 313
Query: 362 tctggccgcaagctacatccatccacaagtgtttgaatcattctttctaagtccaacatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tctggccgcaagctacatccatccacaagtgtttgaatcattctttctaagtccaacatc 253
Query: 422 ctcagggtttctgatgagatgaatagtatcattcaaagccacctgcatgtataatattat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctcagggtttctgatgagatgaatagtatcattcaaagccacctgcatgtataatattat 193
Query: 482 taagaaattttaataaact 500
|||||||||||||||||||
Sbjct: 192 taagaaattttaataaact 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
