Query= MSMg01no334_j15.b1 MSMg01no334_j15.b1 CHROMAT_FILE:
MSMg01no334_j15.b1 PHD_FILE: MSMg01no334_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(634 letters)
>mm_chr1_98178804_98179838
Length = 1035
Score = 1094 bits (566), Expect = 0.0
Identities = 612/632 (96%), Gaps = 11/632 (1%)
Strand = Plus / Plus
Query: 5 gaattcatgaacttctt-caatttggaggatattgttctaagggaggtaacccaatcaca 63
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct: 213 gaattcatgaacttcttac-atttggaggatattgtcctaagggaggtaacccaatcaca 271
Query: 64 aaagaacacacatgacatgcactcactgatacgtggatattaacccagaagctcagaata 123
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 aaagaacacacatgatatgcactcactgatacgtggatattagcccagaagctcagaata 331
Query: 124 accaagatacaatttgcaaaaacaatgtttaagaaatagctaagataaaaaaggagtaag 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cccaagatacaatttgcaaaaacaatgtttaagaaatagctaagataaaaaaggagtaag 391
Query: 184 caaaaggatgttatggggccagggatgggaagatgtcttgtagtctgttgtcaatgatca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 392 caaaaggatgttatggggccagggatgggaagatgtcttgtagtctgttgtcaatgataa 451
Query: 244 aaaatgtcctttctattagttacacacacacacactcacacacacacacacacacacaca 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 452 aaaatgtcctttctattagttacacacacacacac--------acacacacacacacaca 503
Query: 304 cacacacacacacacaaacaatgtgaaaaaccaaatttccaaagagttcttctctactgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacacacacacacacaaacaatgtgaaaaaccaaatttccaaagagttcttctctactgt 563
Query: 364 gatgattgtagtgcatgtttgagattgggaataaagaacacattagtatttattgttagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatgattgtagtgcatgtttgagattgggaataaagaacacattagtatttattgttagt 623
Query: 424 actgacattcagaactatgagaactacatgagtaaaggcagcaggagaaagaagcatcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgacattcagaactatgagaactacatgagtaaaggcagcaggagaaagaagcatcat 683
Query: 484 tcaggctgtacagcagaccccttaacaaatgtaagtgt-tatatgggaaagacatactca 542
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 tcaggctgtacagcagaccccttaacaaatgtaagtgcatatatgggaaagacatactca 743
Query: 543 tgaaggcaacagcatctgtccccactttgtatccagtcatttggaaggacagttggtact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgaaggcaacagcatctgtccccactttgtatccagtcatttggaaggacagttggtact 803
Query: 603 gataaacatccatccacagatattagtcagaa 634
|| ||||||||| ||||||| |||||||||||
Sbjct: 804 gaaaaacatccacccacagaaattagtcagaa 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j15.g1 MSMg01no334_j15.g1 CHROMAT_FILE:
MSMg01no334_j15.g1 PHD_FILE: MSMg01no334_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(578 letters)
>mm_chr1_98332708_98333684
Length = 977
Score = 1073 bits (555), Expect = 0.0
Identities = 572/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 tcttccattacacatgtattgtcataacaagaaactcacaagataagattgcccaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 690 tcttccattacacatgtattgtcataacaagaaactcacaagataagattgtaaaattat 631
Query: 61 cactgtgatgacttgaagactaattcttttataacttttactttattataaatgtgagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cactgtgatgacttgaagactaattcttttataacttttactttattataaatgtgagta 571
Query: 121 attgccagccttaagcaagcaaatggtagtacttcttacatccccaaatgtgcacattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 attgccagccttaagcaagcaaatggtagtacttcttacatccccaaatgtgcacattct 511
Query: 181 caaagagaaaatacagctgtatttggcttgctatgaggggaaaaaatgatgtttttgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 caaagagaaaatacagctgtatttggcttgctatgaggggaaaaaatgatgtttttgcat 451
Query: 241 tttataaacctgactctcattccaatataaggtattttctttcaaattgtctgagcatct 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 tttataaacctgactctcattccaatataaggtattttctttcaaattgactgagcatct 391
Query: 301 ttataggtttcactcactacttcttaatattttcagctctgcctgatataacaagctatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttataggtttcactcactacttcttaatattttcagctctgcctgatataacaagctatc 331
Query: 361 ttggccatggaatactcttttcattttgttcaactaacgactataacttttagagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 330 ttggccatggaatactcttttcattttgttcaactaacgactataacttttagag-aaaa 272
Query: 421 aaaatgagattgtattatttagttttctgatgttctgacaaaaccccatgactcanagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 271 aaaatgagattgtattatttagttttctgatgttctgacaaaaccccatgactcaaagct 212
Query: 481 aattctacaagtgtggtgatttgagtaggaatggattccataggaaaatatatttgaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aattctacaagtgtggtgatttgagtaggaatggattccataggaaaatatatttgaatt 152
Query: 541 ttttggtcattgtggattgaaattattaggaatagtgt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttttggtcattgtggattgaaattattaggaatagtgt 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
