Query= MSMg01no334_k12.b1 MSMg01no334_k12.b1 CHROMAT_FILE:
MSMg01no334_k12.b1 PHD_FILE: MSMg01no334_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:09 2005
(604 letters)
>mm_chr1_154468089_154469087
Length = 999
Score = 1058 bits (547), Expect = 0.0
Identities = 584/599 (97%), Gaps = 5/599 (0%)
Strand = Plus / Plus
Query: 6 gaattcctgatgttcccgggagctaggctcacaggcattaagctttttgaagagcactcc 65
|||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgatgttcctgagtgctaggctcgcaggcattaagctttttgaagagcactcc 265
Query: 66 agacacaacaccaagactccgcctacactcacatgctatagaacctcatacacatctttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agacacaacaccaagactccgcctacactcacatgctatagaacctcatacacatctttc 325
Query: 126 atgtgccactttacacatcccaagtgtcgagcttatcaattagatacacatcaccataac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtgccactttacacatcccaagtgtcgagcttatcaattagatacacatcaccataac 385
Query: 186 acaccttataatttacagctcaggttatcattcaaagcataaagaggaccagagggttac 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 acaccttataatttacagctcaggttatcattcaaagcataaagaggaccagagggctac 445
Query: 246 gtttttcaaatcccacaccaagaattatccctaggggaggtatgctctaatctccttgtt 305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 gtttttcaaatcccacaccaagaattatccctaggggaggtatgctctagtctccttgtt 505
Query: 306 cttgtacaccaacgctatcctcaagaactacgggaacagccttaaagccccggacagttc 365
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 cttgtacaccaacgctatcctcaagaactacgggaacagccttaaagccctggacagttc 565
Query: 366 ttgacaacaaacttgtacccatatacaaatctagcctctactatttcttaactacctgac 425
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 566 ttgacaacaaatttgtacccatatacaaatttagcctctactatttcttaactacatgac 625
Query: 426 cccacaggcaagcgggcagatcacgctgggcattattttctttgtatataaaggaaagat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 626 cccacaggcaagcgggcagatcacgctgggcattattttctttgtatataaag-----at 680
Query: 486 gaaagacagcatcataataccaccttccccataaagttgttgtcagatgccagtgcgcac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaagacagcatcataataccaccttccccataaagttgttgtcagatgccagtgcgcac 740
Query: 546 gaagcgtcttccctgccttacctcaaccccattaactctaaaagtgttcactttgaaga 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcgtcttccctgccttacctcaaccccattaactctaaaagtgttcactttgaaga 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 999
Length adjustment: 10
Effective length of query: 594
Effective length of database: 989
Effective search space: 587466
Effective search space used: 587466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_k12.g1 MSMg01no334_k12.g1 CHROMAT_FILE:
MSMg01no334_k12.g1 PHD_FILE: MSMg01no334_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:09 2005
(288 letters)
>mm_chr1_154628877_154629564
Length = 688
Score = 491 bits (254), Expect = e-143
Identities = 283/298 (94%), Gaps = 10/298 (3%)
Strand = Plus / Minus
Query: 1 tctctctctcttccttactccctccctccctcccacatgcgtgggaaaacttgcgtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctctctctcttccttactccctccctccctcccacatgcgtgggaaaacttgcgtgtgg 380
Query: 61 catgtggctgaactctgaggcatgatgacttaatcattaaacttcatgctctctgtatgg 120
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 catgcggctgaactctgaggcatggtgacttaatcattaaacttcatgctctctgtatgg 320
Query: 121 gagggccaccttatgattgtcactgcctgagatttaagttgggaactaagccttttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagggccaccttatgattgtcactgcctgagatttaagttgggaactaagccttttagga 260
Query: 181 aggtagtgaggacccagggaccaa---------tt-cttgtgtacaagtctcatacatac 230
|||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 259 aggtagtgaggacccagggaccaatgctgtaccttccttgtgtacaagtctcatacatac 200
Query: 231 agggtcttaatatatatttgatgaatggagatacgggtggtagccaacctccacgatg 288
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agggtcttaatatagaagtgatgaatggagatacgggtggtagccaacctccacgatg 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|