BAC Information

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BAC

Clone NameMSMg01-334K12
Chromosome1 (Build37)
Map Location 154,468,294 - 154,629,315
singlet/doubletdoublet
Overlap geneRgl1, EG639787, Apobec4, Arpc5
Upstream geneNiban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2
Downstream geneNcf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334K12.T7 (MSMg01no334_k12.b1)MSMg01-334K12.TJ (MSMg01no334_k12.g1)
ACCAG450097AG450098
length727729
length of high quality
(start - end)
604 (44 - 647)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no334_k12.b1 PHD_FILE: MSMg01no334_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:09 2005CHROMAT_FILE: MSMg01no334_k12.g1 PHD_FILE: MSMg01no334_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,468,294 - 154,468,887)(154,629,018 - 154,629,315)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGCGGA
ATTCCTGATGTTCCCGGGAGCTAGGCTCACAGGCATTAAGCTTTTTGAAG
AGCACTCCAGACACAACACCAAGACTCCGCCTACACTCACATGCTATAGA
ACCTCATACACATCTTTCATGTGCCACTTTACACATCCCAAGTGTCGAGC
TTATCAATTAGATACACATCACCATAACACACCTTATAATTTACAGCTCA
GGTTATCATTCAAAGCATAAAGAGGACCAGAGGGTTACGTTTTTCAAATC
CCACACCAAGAATTATCCCTAGGGGAGGTATGCTCTAATCTCCTTGTTCT
TGTACACCAACGCTATCCTCAAGAACTACGGGAACAGCCTTAAAGCCCCG
GACAGTTCTTGACAACAAACTTGTACCCATATACAAATCTAGCCTCTACT
ATTTCTTAACTACCTGACCCCACAGGCAAGCGGGCAGATCACGCTGGGCA
TTATTTTCTTTGTATATAAAGGAAAGATGAAAGACAGCATCATAATACCA
CCTTCCCCATAAAGTTGTTGTCAGATGCCAGTGCGCACGAAGCGTCTTCC
CTGCCTTACCTCAACCCCATTAACTCTAAAAGTGTTCACTTTGAAGAATT
CTGAATGGGTTACTGGAATGTAAGAAAACAAACACGAGGAAGCCAACTGG
GTAACATATAAAAGGATTTCATAATTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTCTTCCTTACTCCCTCCC
TCCCTCCCACATGCGTGGGAAAACTTGCGTGTGGCATGTGGCTGAACTCT
GAGGCATGATGACTTAATCATTAAACTTCATGCTCTCTGTATGGGAGGGC
CACCTTATGATTGTCACTGCCTGAGATTTAAGTTGGGAACTAAGCCTTTT
AGGAAGGTAGTGAGGACCCAGGGACCAATTCTTGTGTACAAGTCTCATAC
ATACAGGGTCTTAATATATATTTGATGAATGGAGATACGGGTGGTAGCCA
ACCTCCACGATGGCTCCAAGCATCCCTATTTCCCAGATTCACACTCTTGT
GTAAACCTCTTTCATAACGAATCAGTGTTGACCAAGGCGACCCCTGAAAA
CCATGGCCTTGATGGCATGGGACTTCCAATGTTGGGTCACAAAGACACTG
CATTGCCTGCCTTTTGCTGCTGGAAGCCTGCAGTCACCTTGTGAGGACAA
TCAGGCAGCCCTGTGGAAAGGTCCACTCCTGCCGGCCATGTGAAGTTGTC
CCTGTGGCAGAGTTGTCCAGCTTCCATATAACTTCCGGTTGTGGCTGCAT
ATTGCCACCCATCTACAGGCTTCACGACAAATAATCTCCCCGTAAGACCT
ACCCCCACCTGCGTCGTGGTGTAACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_k12.b1 MSMg01no334_k12.b1 CHROMAT_FILE:
MSMg01no334_k12.b1 PHD_FILE: MSMg01no334_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:09 2005
         (604 letters)



>mm_chr1_154468089_154469087
          Length = 999

 Score = 1058 bits (547), Expect = 0.0
 Identities = 584/599 (97%), Gaps = 5/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctgatgttcccgggagctaggctcacaggcattaagctttttgaagagcactcc 65
           |||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgatgttcctgagtgctaggctcgcaggcattaagctttttgaagagcactcc 265

                                                                       
Query: 66  agacacaacaccaagactccgcctacactcacatgctatagaacctcatacacatctttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agacacaacaccaagactccgcctacactcacatgctatagaacctcatacacatctttc 325

                                                                       
Query: 126 atgtgccactttacacatcccaagtgtcgagcttatcaattagatacacatcaccataac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtgccactttacacatcccaagtgtcgagcttatcaattagatacacatcaccataac 385

                                                                       
Query: 186 acaccttataatttacagctcaggttatcattcaaagcataaagaggaccagagggttac 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 acaccttataatttacagctcaggttatcattcaaagcataaagaggaccagagggctac 445

                                                                       
Query: 246 gtttttcaaatcccacaccaagaattatccctaggggaggtatgctctaatctccttgtt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 gtttttcaaatcccacaccaagaattatccctaggggaggtatgctctagtctccttgtt 505

                                                                       
Query: 306 cttgtacaccaacgctatcctcaagaactacgggaacagccttaaagccccggacagttc 365
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 cttgtacaccaacgctatcctcaagaactacgggaacagccttaaagccctggacagttc 565

                                                                       
Query: 366 ttgacaacaaacttgtacccatatacaaatctagcctctactatttcttaactacctgac 425
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 566 ttgacaacaaatttgtacccatatacaaatttagcctctactatttcttaactacatgac 625

                                                                       
Query: 426 cccacaggcaagcgggcagatcacgctgggcattattttctttgtatataaaggaaagat 485
           |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||
Sbjct: 626 cccacaggcaagcgggcagatcacgctgggcattattttctttgtatataaag-----at 680

                                                                       
Query: 486 gaaagacagcatcataataccaccttccccataaagttgttgtcagatgccagtgcgcac 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaagacagcatcataataccaccttccccataaagttgttgtcagatgccagtgcgcac 740

                                                                      
Query: 546 gaagcgtcttccctgccttacctcaaccccattaactctaaaagtgttcactttgaaga 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcgtcttccctgccttacctcaaccccattaactctaaaagtgttcactttgaaga 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 999
Length adjustment: 10
Effective length of query: 594
Effective length of database: 989
Effective search space:   587466
Effective search space used:   587466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_k12.g1 MSMg01no334_k12.g1 CHROMAT_FILE:
MSMg01no334_k12.g1 PHD_FILE: MSMg01no334_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:09 2005
         (288 letters)



>mm_chr1_154628877_154629564
          Length = 688

 Score =  491 bits (254), Expect = e-143
 Identities = 283/298 (94%), Gaps = 10/298 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctctctcttccttactccctccctccctcccacatgcgtgggaaaacttgcgtgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctctctctcttccttactccctccctccctcccacatgcgtgggaaaacttgcgtgtgg 380

                                                                       
Query: 61  catgtggctgaactctgaggcatgatgacttaatcattaaacttcatgctctctgtatgg 120
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 catgcggctgaactctgaggcatggtgacttaatcattaaacttcatgctctctgtatgg 320

                                                                       
Query: 121 gagggccaccttatgattgtcactgcctgagatttaagttgggaactaagccttttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagggccaccttatgattgtcactgcctgagatttaagttgggaactaagccttttagga 260

                                                                       
Query: 181 aggtagtgaggacccagggaccaa---------tt-cttgtgtacaagtctcatacatac 230
           ||||||||||||||||||||||||         || ||||||||||||||||||||||||
Sbjct: 259 aggtagtgaggacccagggaccaatgctgtaccttccttgtgtacaagtctcatacatac 200

                                                                     
Query: 231 agggtcttaatatatatttgatgaatggagatacgggtggtagccaacctccacgatg 288
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agggtcttaatatagaagtgatgaatggagatacgggtggtagccaacctccacgatg 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)