BAC Information

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BAC

Clone NameMSMg01-334O04
Chromosome1 (Build37)
Map Location 192,658,496 - 192,659,122
singlet/doubletsinglet
Overlap geneRps6kc1
Upstream genePtpn14, Smyd2, Prox1, LOC100039394, EG666975
Downstream geneAngel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334O04.T7 (MSMg01no334_o04.b1)MSMg01-334O04.TJ (MSMg01no334_o04.g1)
ACCAG450271AG450272
length728789
length of high quality
(start - end)
627 (74 - 700)45 (56 - 100)
definitionCHROMAT_FILE: MSMg01no334_o04.b1 PHD_FILE: MSMg01no334_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:27 2005CHROMAT_FILE: MSMg01no334_o04.g1 PHD_FILE: MSMg01no334_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGCTCCGCGG
AATTCAAACCATTCCCAACCCCTCCCAACTCCAGCACCACTAGCTTTTTC
CTGCTGTACCCAGAGATGAGGAAGCTATTTGAAGGCAATGAGAATTGATT
GCTGCCTTTAGACACTGTCTTTCCAAGGTGGTAGTCTCCCCATGACAGCT
TGCACCCAATTCCCCGGGCAGTTTCCTTGCTAAGTTTCCTGACTCTACCC
CAACAGTGATCAGGGTGCAGTTCTTGTTAAGAGCTCTGTCTGGCCATGCC
AGTCTGTGAAGTGTCGGGATAGTGGTCTTAGTAGATTCCTTACCATGCTG
TCCCCTCTGTACTCTAATCTAGTTTGTTGATAAGGCCGTCTGCCCTGTGT
GACAAGGCGTTGTGTCTCCTGTGAGGAGGAACTACAGAAATCCAGCTGGA
CATGCAGAGCCCTGCTCCTCTCAGGACTTAGCTGCCTGGCAGGGCGAAGC
CAGAGTTTGGAAGTTGAGACTGTTTCTAACTGTGTTGCTCCAGCAGCCTT
TCCACAGTCACTGATCTTGTTTGTAGGCCATAGACTGGTTTCCACATCAC
AGATAGCCAAATATTTGAAGAAAAGCTATTTTTCTCATGAGTCACTCCAA
GCTCTTTTCTAATAATCACTGGCTGTACGGATGGGGCATTTATTTTTCTC
ACCATTGGTTGGCACTTTTTTTGGTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCACTCCAACCCGTCATATGCTAGAACACCCAAACAAGAAGTCA
GAGGCCCCAAAGGTCAGAGCAGAGTTGGAGGGGCAGTGGGGAAAGCTGGA
GAAACAAAAGAAGCCAACGTATAGGGGGGGGGGTGGGGTTGCTTTCTTTT
TTTCTTTTTTTTTTCTTTTTTTTTTCTCTTTTTTTTTTTTCTCTTTCTTT
TTTTTTTTTTTTTTTTTTCCCTTTTTCTCCTCTTCCTTTTTCTCTTTTTT
TTTTTTTTTTCTTCCCCCCCCTCTTCTTTCGCCCNACCCTCCCGCCTTTT
CCCCTCTTTCCACTCCCCCCCTTTTCCTTTTCTTTCTTTTTTTTTTTTTC
TCTTCTTCATTTATTTTTCCTCTCCCTCTTCTTTCCTTTTTCTTCTTCCT
CTTTTTCCCTTTTTTTTATTTTCTTCCCTTCTTTCCTCTTTTTCTCCTCC
TCCTTCCCCCCTTTCTTTCCCTTCTTTTTTCTTATCTCCTATTTTCTCCT
TTTTTTCTTCTTTTTTCTTTTCTTCTTTTCCCCTTTTTTTTTCTTTTCTT
TCCTTTCTTCCTCCTTTCTTTCTTTCTTTTTTTTCCCTCCCCCCTTTTTT
CTCTCTCCTCTTTTTTTTTTTCCCCCCCCTCTTTTTTTACTTTTTTTTTC
TCTTTTTTTTCTCCTTTTTTTTTTCCCCCTCTTTTTCTTCCTCCCTTTTC
TTCTCTTCTCTCTCCCTCCCCTTTTTTCTTTTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_o04.b1 MSMg01no334_o04.b1 CHROMAT_FILE:
MSMg01no334_o04.b1 PHD_FILE: MSMg01no334_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:27 2005
         (627 letters)



>mm_chr1_192658296_192659322
          Length = 1027

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaactccagcaccactagctttttcctgctgtacccagagatgaggaagctatttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cccaactccagcaccactagctttttcctgctgtacccagagatgaggaagctatttgaa 768

                                                                       
Query: 61  ggcaatgagaattgattgctgcctttagacactgtctttccaaggtggtagtctccccat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 767 ggcaatgagaattgattgctgcctttagacactgtctttcctaggtggtagtctccccat 708

                                                                       
Query: 121 gacagcttgcacccaattccccgggcagtttccttgctaagtttcctgactctaccccaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 707 gacagcttgcacccaattccccaggcagtttccttgctaagtttcctgactctaccccaa 648

                                                                       
Query: 181 cagtgatcagggtgcagttcttgttaagagctctgtctggccatgccagtctgtgaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagtgatcagggtgcagttcttgttaagagctctgtctggccatgccagtctgtgaagtg 588

                                                                       
Query: 241 tcgggatagtggtcttagtagattccttaccatgctgtcccctctgtactctaatctagt 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcgggaaaggggtcttagtagattccttaccatgctgtcccctctgtactctaatctagt 528

                                                                       
Query: 301 ttgttgataaggccgtctgccctgtgtgacaaggcgttgtgtctcctgtgaggaggaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttgttgataaggccgtctgccctgtgtgacaaggcgttgtgtctcctgtgaggaggaact 468

                                                                       
Query: 361 acagaaatccagctggacatgcagagccctgctcctctcaggacttagctgcctggcagg 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 467 acagaaatccagctggacatgctgagccctgctcctctcaggacttagctgcctggcagg 408

                                                                       
Query: 421 gcgaagccagagtttggaagttgagactgtttctaactgtgttgctccagcagcctttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcgaagccagagtttggaagttgagactgtttctaactgtgttgctccagcagcctttcc 348

                                                                       
Query: 481 acagtcactgatcttgtttgtaggccatagactggtttccacatcacagatagccaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 acagtcactgatcttgtttgtaggccatagactggtttccacatcacagatagtcaaata 288

                                                                       
Query: 541 tttgaagaaaagctatttttctcatgagtcactccaagctcttttctaataatcactggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttgaagaaaagctatttttctcatgagtcactccaagctcttttctaataatcactggc 228

                                      
Query: 601 tgtacggatggggcatttatttttctc 627
           |||||||||||||||||||||||||||
Sbjct: 227 tgtacggatggggcatttatttttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)