TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAAGCGGA
ATTCTAAATCTAGATTCCCACACAGCCATCAAGAAAGACAATCTCTTCTG
CCTTGGGCAGAGCTTGAACAATAGAAGCCCTAAAAGCCTGGTGCCTACAC
AGTGACACACTTCCTCCAACAAGGCCAAATTTCCTAATAGTGCCACTTTC
CATGGGTCAAGTGTACTCAAACCACCACACAAAGGATCAGGGGATCTTCT
AAAAGAATTATATGTCCTAGTAGTATCAGAATGTATACCCCTATATTCCT
AACATTAAAAATATCCAAATGTTATGGGAATAAGGAGAACACTACCAAAA
TGCCACTATGGATGAGGAAAGCAAAAGAAACCTAAATTCTGCACAAAAAT
TTACAAATAACTAAGTAAATCATGGAATGAGAGAGGTGATCATCTCCACG
GAAGAACATATCAACTGGTTGTGTCATTGCTCAGCCTTAAAAATACACAC
AAATATAATATTATATTGACTCTACAGGTTATATTTATGAACATATATGG
ATATACAGATACATACGTACGTGGAACAATAAATAATGCGAAAAGATCAC
AAATTTGAAGGTGATTAGAGGGCATATAATGGAAGGGTTTGGCGAAGAAA
ATGGATAAATTAACATAATTAACATACAATCTCGTAACATACCAAAAACT
TAAACTATTTTTGTACCATTCATCTGTCTATTTTATTTGAAAAAAACTAT
N

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCTAATTCTCCACTAAAACCAGGGTTCTGTGCTTT
TTTTCTAGTTCAGAGAGTTTTAATGACTGTGTCAAGTTCTTTAGGGGATA
TAGGACTGTTGAGTAGATTATCTGGTCTTGATTTGACTTTGGTAAGTGGT
AAATGCGTAGAAAACCATCCATCTCAGGAAAGATTTTCCAATTTTGTGGA
GTACAGGCTTTTAAAGTAAGATTTCATGAAACTTTTAATTTCCTCAGTGT
TGTTATAGCTCCCTATTCATTACTAATTTGTTTATTTCAATATTGTCTCT
CTGTCTTTGGGTTACTTTGGCTAAGGATTTGTCTATCTTCTTCAATTTTT
TTAAAAGAGCCAGTTCTTGGATTTGTTGATTCTTTATATTGTTTTGTTGC
TTTTGCTGTTTGCTTGCTTATTTTGTTGTTTCCTTTTTTGTTGTTTCTGT
TGTTGTTGTTCCTTTTTTCTTTTTATTAGATATTTCCTTTATTTTACATG
TTCAATTTTATCCTCGTGTTTTCTTTCCTCTTCCTAATAATTCCCCCATA
CTATTCCATATTCCCTCCTGCTCTCTATTCTCTTCTACCTCTTGCCTTTT
CCTGTTATTGGCATTTCTTCCTTAATCTTGGGTTTCTCCACTACTCTTTC
ATTTATTGCCTTTGGGCACCTTCTTCCTCTTCATTTGGATGTGTCATTCT
ATGATTTAATTTCTTGTGTCCTTCTTTGTTTCCTTACC

Query= MSMg01no334_o05.b1 MSMg01no334_o05.b1 CHROMAT_FILE:
MSMg01no334_o05.b1 PHD_FILE: MSMg01no334_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:27 2005
         (504 letters)



>mm_chr1_110837017_110837920
          Length = 904

 Score =  919 bits (475), Expect = 0.0
 Identities = 498/507 (98%), Gaps = 6/507 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctaaatctagattccc--acacagccatcaagaaagacaatctcttctgccttgg 58
           |||||||||||||||||  ||  | |||||||||||||||||||||||||||| ||||||
Sbjct: 878 gaattctaaatctagat--ccaaagacagccatcaagaaagacaatctcttctaccttgg 821

                                                                       
Query: 59  gcagagcttgaacaatagaagccctaaaagcctggtgcctacacagtgacacacttcctc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gcagagcttgaacaatagaagccctaaaagcctggtgcctacacagtgacacacttcctc 761

                                                                       
Query: 119 caacaaggccaaatttcctaatagtgccactttccatgggtcaagtgtactcaaaccacc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 caacaaggccaaatttcctaatagtgccactttccatgggtcaagtgtactcaaaccacc 701

                                                                       
Query: 179 acacaaaggatcaggggatcttctaaaagaattatatgtcctagtagtatcagaatgtat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 acacaaaggatcaggggatcttctaaaagaattatatgtcctagtagtatcagaatgtat 641

                                                                       
Query: 239 acccctatattcctaacattaaaaatatccaaatgtta-tgggaataaggagaacactac 297
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 640 acccctatattcctaacattaaaaatatccaaatgttagt-ggaataaggagaacactac 582

                                                                       
Query: 298 caaaatgccactatggatgaggaaagcaaaagaaacctaaattctgcacaaaaatttaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaaatgccactatggatgaggaaagcaaaagaaacctaaattctgcacaaaaatttaca 522

                                                                       
Query: 358 aataactaagtaaatcatggaatgagagaggtgatcatctccacggaagaacatatcaac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aataactaagtaaatcatggaatgagagaggtgatcatctccacggaagaacatatcaac 462

                                                                       
Query: 418 tggttgtgtcattgctcagccttaaaaatacacacaaatataatattatattgactctac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tggttgtgtcattgctcagccttaaaaatacacacaaatataatattatattgactctac 402

                                      
Query: 478 aggttatatttatgaacatatatggat 504
           |||||||||||||||| ||||||||||
Sbjct: 401 aggttatatttatgaagatatatggat 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)