BAC Information

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BAC

Clone NameMSMg01-334O10
Chromosome1 (Build37)
Map Location 71,431,040 - 71,624,908
singlet/doubletdoublet
Overlap geneAbca12, LOC629101, Atic
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneFn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334O10.T7 (MSMg01no334_o10.b1)MSMg01-334O10.TJ (MSMg01no334_o10.g1)
ACCAG450283AG450284
length701731
length of high quality
(start - end)
192 (99 - 290)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no334_o10.b1 PHD_FILE: MSMg01no334_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:29 2005CHROMAT_FILE: MSMg01no334_o10.g1 PHD_FILE: MSMg01no334_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,624,717 - 71,624,908)(71,431,040 - 71,431,419)
sequence
AATAGATTCCGAGGTAGCGCGGAATTCAAGATGGTTTCAACACCACCATA
TAACATAGCACTCACAACCATCTGTAACTCCAGTCTATTTTCTCCGACGC
CCTCTTCTGGCCTCCATGAGCACCAGGAAGGTACACATAATACATACATA
AGTACATGCATGTATATAAAATATAAAAATATATAAAAATAAATCTTTAA
AAAAGCATAAGCTAACGATGAATTATCCAGACAAAGCAAGAGAATTTGGA
TTTTGCCTACATCACACAGGGAAGGAAAATAGCTCACTTANATCANATCG
ACATAGCTTTCCGATGCGACTCTAGGAAGCTAATATTCAGGACCCCACAA
TTTCGTTTTGTAAAGCTAGGAACTGAAACTGAGGCCAGGCATCGACTGCT
CGAGTGGCCTGTGCACATCCCCAGACTCTAAGGGGCTATCTGAAATCATC
CTTACAATTCTACGACCCCAGCACACTCCAGTTCTCGCTTACCCTTTTAG
CTCGGTCCACATTATCCCTGAAAGGAAAGAAGGCGTCGGAGCTGACAGAC
ACGCCGCTCAGCTTGTCCACCCATTCCTTCTTCTCCGCCTCCGTGAGTAA
CTCAGGAACCTCTTCAAACATTGTTTCCCATTTCACCAGGTCTTCGCCCT
AAGGAGACAGGGACGCATAAGGAGCCCAGCATCTATGTTAGCGCATCCCA
T
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTCTCGCAGAATTCTTGCTTTCAAGTTTACTACATATACA
GATCTTCAGTTTCCATGTGGATCACAGATGTCTCCACACTTACAAGCAGA
ATAAGTTGCACAATGGTTGCCATGAAGTTCTGGAAGATAAAGACGTAAGG
ATGTATGTAAACTATTACCATTGGCATAATGTGTGTGTGATGGGAGAGTT
GTACCCACGATACTTAAAGTATGAAATCTGGGCTCAATACCATTTGGTGT
CACCAAATAGGGTAGGCTGTAGTCAGGTATTCGAGAAAACAGTGCCTGCC
GTGAGATTTGAAGGACAAGTTGCAGACAGCTAAGCAAATGACAAGGAAGG
GAAAAATAATATATGCAGAGGCATGAATGTAAGAAAACCCTGGAGGAGCC
TGAAGTAGAATGGACCCCCATGGTAATGCATTAACTTGAATTCAGATGTA
AAGCAATTGGCTCACCTGGTCATTTCATTATCCTTGCAAAATAGGCTACT
GTGCTGTACAACGACTGAATATTCTAGATTCCAGTTATAGCACCAGGGTA
GCATTTCCTTTATTTGGGTGACCGATGTGACATATGCCGCTACTATAGGG
ATGGCATTGTTATTAGAGATGTCCCATTCATAGAAGGTCCAGAGTGGTCT
ATGATGCCACCTGACATTCTTGTTTATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_o10.b1 MSMg01no334_o10.b1 CHROMAT_FILE:
MSMg01no334_o10.b1 PHD_FILE: MSMg01no334_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:29 2005
         (192 letters)



>mm_chr1_71624434_71625025
          Length = 592

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccctcttctggcctccatgagcaccaggaaggtacacataatacatacataagtacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gccctcttctggcctccatgagcaccaggaaggtacacataatacatacataagtacatg 416

                                                                       
Query: 61  catgtatataaaatataaaaatatataaaaataaatctttaaaaaagcataagctaacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 catgtatataaaatataaaaatatataaaaataaatctttaaaaaagcataagctaacga 356

                                                                       
Query: 121 tgaattatccagacaaagcaagagaatttggattttgcctacatcacacagggaaggaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgaaatatccagacaaagcaagagaatttggattttgcctacatcacacagggaaggaaa 296

                       
Query: 181 atagctcactta 192
           ||||||||||||
Sbjct: 295 atagctcactta 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no334_o10.g1 MSMg01no334_o10.g1 CHROMAT_FILE:
MSMg01no334_o10.g1 PHD_FILE: MSMg01no334_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:29 2005
         (380 letters)



>mm_chr1_71430840_71431619
          Length = 780

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttgctttcaagtttactacatatacagatcttcagtttccatgtggatcacagatgt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttcttgctttcaagtttactacatatacagatcttcagtttccgtgtggatcacagatgt 260

                                                                       
Query: 61  ctccacacttacaagcagaataagttgcacaatggttgccatgaagttctggaagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccacacttacaagcagaataagttgcacaatggttgccatgaagttctggaagataaa 320

                                                                       
Query: 121 gacgtaaggatgtatgtaaactattaccattggcataatgtgtgtgtgatgggagagttg 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgtaaggatatatgtaaactattaccattggcataatgtgtgtgtgatgggagagttg 380

                                                                       
Query: 181 tacccacgatacttaaagtatgaaatctgggctcaataccatttggtgtcaccaaatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccacgatacttaaagtatgaaatctgggctcaataccatttggtgtcaccaaatagg 440

                                                                       
Query: 241 gtaggctgtagtcaggtattcgagaaaacagtgcctgccgtgagatttgaaggacaagtt 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaggctggaggcaggtattcgagaaaacagtgcctgccgtgagatttgaaggacaagtt 500

                                                                       
Query: 301 gcagacagctaagcaaatgacaaggaagggaaaaataatatatgcagaggcatgaatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gcagacagctaagcaaatgacaaggaagggaaaaataatatatgcagaggcatgaatata 560

                               
Query: 361 agaaaaccctggaggagcct 380
           ||||||||||||||||||||
Sbjct: 561 agaaaaccctggaggagcct 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)