NNNNTTCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGCCCATACCCAAACATAATAAAAGCAATTTACTGCAA
AACAGCCAATATTAAATTAAATGGAGACATACTTGAAGCAATCCAACTAA
AGTTGGAACAGGAAAAGGATTCCCACTCTCCCCATATCTAAGCAATATAG
TGCTAGCTAGAACAATAAGACAACAAAGAGATCAAGGGGATACAAATTGG
CAAAGAAGAAATAAAGGTATCACTATTTGCAGATAATATGGTAATATACT
TGAGTGACCCCAAAAATTTACCAGAAAACTTCTCCAGCTGATAAACAACT
TTATCAAAGTGGTCGGATATAAAATTAACTCAAATAAATCAGTAGTCTTC
CTTTATAAAAAATGATAAAGAGGCTCAGAAAGAAATTAGGAAAACAACTC
CCTTCATAATAGCCACAAATAATAAAAAATACCTTGGGATAACTCTAATG
AAACAAGTGAAAGACCTGTATGACAATAACTTCAAGTCTCTCAAGAAATA
AATAGAAGATCTCAGAANATAGGGAGATCTCCCATGCTCATGGAAGGGCA
GAATACATAGTAAAAATGGCTATCCTAACAAAGGCAATTTACACATTCAG
TGTAATCCCATGAGAATCCCACACAATCTTCTCAGACTGAAAAAAGAAAT
TTAAATTTCTCTGTAAGGGCAACCAACAACCACCACCAACCAACAACCAA
CAATGGGAAAATCAACCCCAAC

TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTGGCATATTTGGTATCTAACTTCTTG
AGTTCCTTATAAATTTTTTAAACTAACACTGTCAGATGTAGGGTTGGTAG
ACCTTTGTTCTCAATGTGTAGGCTGCCATTATGGCCTATTGACAATGTCC
TTTGCCTTACAGAAGCATTTCAGTTTTATGAGGTCCCATTTTTCAATTGT
TAATCTCACTAAAGTGAGATGGTAATTTTAAAGAATAAAATCCAGTACAT
ACACAATTAGGTGCATCCAGCTGTCTCAAACAAAAGAGCAATCATGAGCT
TAAAAAGGTGACAAGTTACAGGAAGTCAATAAAATTCAGAGAAAACACTG
AAAACAATCATTTTGCTCAAGATCCTACATTCATTATTTAGAGACAAATA
GACAATATCCAAATTAGAGACAAAAATAAGGACATGCTATTAAATAAATC
AAAATTTTGAGTAGAAAAATAAAATAGATGCGATAGCACAAATGTGGACA
TAGAACCAAAATATGAAGCACTACAAGCAGTAGTTAGTGGTAGAACTACA
GAGAGAACACCGGTCTTTTGATACATAGTAACAACCACATAATTCAATGT
ATATCCATTGTAGTTTAAAGTATAGAGAAGAGGCTAGAGATGAAGCCAGG
TTGTTAGAATGCTTAGTTGTATGCATTAAAGCTGTGGGTTCATTCCCTA

Query= MSMg01no335_a24.g1 MSMg01no335_a24.g1 CHROMAT_FILE:
MSMg01no335_a24.g1 PHD_FILE: MSMg01no335_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:42 2005
         (610 letters)



>mm_chr1_50433584_50434593
          Length = 1010

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttggcatatttggtatctaacttcttgagttccttataaattttttaaactaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttggcatatttggtatctaacttcttgagttccttataaattttttaaactaacac 260

                                                                       
Query: 61  tgtcagatgtagggttggtagacctttgttctcaatgtgtaggctgccattatggcctat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagatgtagggttggtggacctttgttctcaatgtgtaggctgccattatggcctat 320

                                                                       
Query: 121 tgacaatgtcctttgccttacagaagcatttcagttttatgaggtcccatttttcaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacaatgtcctttgccttacagaagcatttcagttttatgaggtcccatttttcaattg 380

                                                                       
Query: 181 ttaatctcactaaagtgagatggtaattttaaagaataaaatccagtacatacacaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatctcactaaagtgagatggtaattttaaagaataaaatccagtacatacacaatta 440

                                                                       
Query: 241 ggtgcatccagctgtctcaaacaaaagagcaatcatgagcttaaaaaggtgacaagttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgcatccagctgtctcaaacaaaagagcaatcatgagcttaaaaaggtgacaagttac 500

                                                                       
Query: 301 aggaagtcaataaaattcagagaaaacactgaaaacaatcattttgctcaagatcctaca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagtcaataaaattcagagaaaacactgaaaacaatcattttgctcaagatcctaca 560

                                                                       
Query: 361 ttcattatttagagacaaatagacaatatccaaattagagacaaaaataaggacatgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcattatttagagacaaatagacaatatccaaattagagacaaaaataaggacatgcta 620

                                                                       
Query: 421 ttaaataaatcaaaattttgagtagaaaaataaaatagatgcgatagcacaaatgtggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaataaatcaaaattttgagtagaaaaataaaatagatgcgatagcacaaatgtggac 680

                                                                       
Query: 481 atagaaccaaaatatgaagcactacaagcagtagttagtggtagaactacagagagaaca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 atagaaccaaaatatgaagcactacaagcagtagttagtggtaggactacagagagaaca 740

                                                                       
Query: 541 ccggtcttttgatacatagtaacaaccacataattcaatgtatatccattgtagtttaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccggtcttttgatacatagtaacaaccacataattcaatgtatatccattgtagtttaaa 800

                     
Query: 601 gtatagagaa 610
           ||||||||||
Sbjct: 801 gtatagagaa 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)