BAC Information

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BAC

Clone NameMSMg01-335F18
Chromosome1 (Build37)
Map Location 75,324,346 - 75,483,951
singlet/doubletdoublet
Overlap geneDes, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Upstream geneGpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep
Downstream geneAW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335F18.T7 (MSMg01no335_f18.b1)MSMg01-335F18.TJ (MSMg01no335_f18.g1)
ACCAG450633AG450634
length768767
length of high quality
(start - end)
279 (33 - 311)318 (67 - 384)
definitionCHROMAT_FILE: MSMg01no335_f18.b1 PHD_FILE: MSMg01no335_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:05 2005CHROMAT_FILE: MSMg01no335_f18.g1 PHD_FILE: MSMg01no335_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,324,346 - 75,324,621)(75,483,634 - 75,483,951)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCTTTC
CTCCTCCTCAAGTTCCATCCAATGTCCTGCCCTTTGCTGCTGGTTTAACT
ATGAAAATAGAAGCCTTCAAAGAGCACATGGCTTTTGTTTCTGTCGGGGG
AGTCATCTGTGTTCCAGGGTAAGGCAGCCCCTCTACTTGCAAAGAAGTGT
GGAACTGGGATCCAGGACAGGGTGAGAGGGGCAGAGTCACCAACCCTGGA
AACCGGACTGGAAACCAGCACTGAGTACAGATCTATTGCGCAGCAGCAAG
CATTTTATACAGCCGTTGGACCAATGAGAAAAGGGCATGAGCTCTGGGGT
AGATATTCACACCCCAATGAGGAGGTGCCAGGCTGCCAGCACCTGAGGGT
GCTTTCGTGCAGATGGGGGAAGGAAGCAGGCCCTGCTCTGTTCTGGATTG
GGATCTGCCGCTCACGAAACTCTTAAGAACCTCTTCTCTTGTGGCACATG
GTTTGGGCAGCGACACTGGGCCCTCGCTATATTATATGTCTGTCCCCCTT
CTCTCCTACCCACCATGTTTTCTCTCTTTGTCTCCCTAACCCACATCTTT
TCTCTTTTCCCATTTTTTTTTAAAAATGTCTTTCCGCCTTTTTTCCACGG
TTCCTTCTTTGTTTACTTAAACTCACCTTATTTATTCCTCCCCTCCTTTT
CACCCTCTTTTTCTTATTTTGTTTCCTCCCTCCTCACAGTAATATGTTTT
GTTCTCCCACTCTTTTTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCGGGAAGCGGCTGAGGCCTCAATACCTCCCC
ACCCCCACCCCCCAGGGAAGAAACACATTCTGGTGCTGAGCGAGCTGAGA
ACCGAGGACACCGGAGAAGTCTGCTTCCAGGCGGGACCCGCCCAGTCCTT
GGCTCGGCTGGAGGTGGAGGGTAAGCTTCTGAAGCAAAGGCGACAGGGAA
GGGCATCATCGCCCATCCTGGGACTGACTGACTAGCCACCGGTCCTAGAG
ATGCTGCTGTCTTCATCTCTCCTCTTTGAGGCTCTCTTGGGGCAGGTCAC
AGAGAGCAGCTCATTTCTTCAGGAGGAGATGGAGAGGAAGAGACTTTATA
CTGGGCATGCAGGAAAACGGACTGGCGGCCCGGAGGGCTTGTGCCCTGAG
TGTAGGTGTCCTATTACGGCATATATATCTCTCCTCTAGGGGCCCGGTGT
GTCCCCATTTAACCCCTGGTCCTCCTTCCCCTCGTTTGTCTTTTCAGATG
TTGCCTTTTGCTCCCTTTTTTGGTGCATATTGCTTCGCTCACTCCTCCCT
GTCGTGTTTTTTTTTTGCCTGCGTTCTTTTTTTTTTCTCTCCACTTTTTT
TTTCCCCTCCCGCTCTTTCCTTATCTTCCACTATCTTCCCCTTTTTTTTA
TCCCCCTCTTCTTTTTTTCCCTTTCTTTTACTTTTTCACTTTTTCTCTGC
TTCTCTCTCCTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_f18.b1 MSMg01no335_f18.b1 CHROMAT_FILE:
MSMg01no335_f18.b1 PHD_FILE: MSMg01no335_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
         (279 letters)



>mm_chr1_75324143_75324821
          Length = 679

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttctttcctcctcctcaagttccatccaatgtcctgccctttgctgctggtt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcttccctcctcctcaagttccatccaatgtcctgccctttgctgctggtt 263

                                                                       
Query: 64  taactatgaaaatagaagccttcaaagagcacatggcttttgtttctgtcgggggagtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taactatgaaaatagaagccttcaaagagcacatggcttttgtttctgtcgggggagtca 323

                                                                       
Query: 124 tctgtgttccagggtaaggcagcccctctacttgcaaagaagtgtggaactgggatccag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgtgttccagggtaaggcagcccctctacttgcaaagaagtgtggaactgggatccag 383

                                                                       
Query: 184 gacagggtgagaggggcagagtcaccaaccctggaaaccggactggaaaccagcactgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagggtgagaggggcagagtcaccaaccctggaaaccggactggaaaccagcactgag 443

                                               
Query: 244 tacagatctattgcgcagcagcaagcattttataca 279
           ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacagatctattgcgcagcagcaagcattttataca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no335_f18.g1 MSMg01no335_f18.g1 CHROMAT_FILE:
MSMg01no335_f18.g1 PHD_FILE: MSMg01no335_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
         (318 letters)



>mm_chr1_75483434_75484151
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccgggaagcggctgaggcctcaatacctccccacccccaccccccagggaagaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcccgggaagcggctgaggcctcaatacctccccacccccaccccccagggaagaaacac 459

                                                                       
Query: 61  attctggtgctgagcgagctgagaaccgaggacaccggagaagtctgcttccaggcggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attctggtgctgagcgagctgagaaccgaggacaccggagaagtctgcttccaggcggga 399

                                                                       
Query: 121 cccgcccagtccttggctcggctggaggtggagggtaagcttctgaagcaaaggcgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cccgcccagtccttggctcggctggaggtggagggtaagcttctgaagcaaaggcgacag 339

                                                                       
Query: 181 ggaagggcatcatcgcccatcctgggactgactgactagccaccggtcctagagatgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggaagggcatcatcgcccatcctgggactgactgactagccaccggtcctagagatgctg 279

                                                                       
Query: 241 ctgtcttcatctctcctctttgaggctctcttggggcaggtcacagagagcagctcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgtcttcatctctcctctttgaggctctcttggggcaggtcacagagagcagctcattt 219

                             
Query: 301 cttcaggaggagatggag 318
           ||||| ||||||||||||
Sbjct: 218 cttcaagaggagatggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)