CGGTCGCTAAACTACTCACTATTTCCAGAGAATCCGCGGAATTCTGTCTG
TTCCCAGAACGCTCTGTCAGCTGACAGCNACTTTCACCTTGAATCCTTCA
GTCACCTTTTCCTAACAATCCCTTTGCAGCATGGCTAAAAGCACTAGCTT
GCGCCATCTTGCCTGTAATTGCAGTATGTGCACTTAGAGCTGCACTTGAA
CTATAGACTATTTGACTGATCCTTAAGACCACAGTTTGTATACAGATGAA
CTTTTCCATTTCCTACTCCATAGTTTATATTCCGACCACCCGAACTGATT
TCCAGCACTATTTGTTTAGACCGCAACGCTCACATAAATCCTTCCCAGTA
AGTTGATTATTATGCTCCCTGACTTGCGTTGCATCGCCGATCAAACTGTT
TCCCTGATCGCCACACGACCCTTTGTGCTAGGTCATATTCTTTACCTATC
TGTTCTATTTTACCTTTGACCCACAGTTCTTTGCCCCAGCGTCCATCATC
CCGTTCTATTCTTTCCAAATTTTTTCTGCCTTTCCTCCTACTCATTTTGT
TCAGCCCTGCTTTTTCTTTTTTATTACCCTGCTTTTTATTTCTTCTTCCC
CCCCATTTTTTCCCCTTTTGTTTTTCCTCTCTCCTCCCCCCTCTCCTTCC
CCCCCCACCTTTACCTATTTTTCACCCCCACCCCCGCTTTTCTACCTCAC
CCCAACCATCCCCTTTTTCTCCCTTCTTTTCCCTTTCTCTCCCGCCCCCC
CCCTCCCCCTCCCTTTCTATCCTCTCCTCCTTCN

NCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCTGGAGATCAAATATTCCCAGA
ACCCATTGTATGGAATCTCTAANACAGGCATGAACACACACATTCAGAGT
GCTGATTCTGATCTTAATGGATGGTAATCTAGCCTTAGAGGCACCTGTCT
ACTTATCCTTGCAGGGCCTGCCCTCCCCTGTTTGCCAGGCCCACCTCAAT
ACCATTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TAGACTATGGTGGCCTATTAACTAGCCTTTTAGTCTACACTGGTCCTGCA
CTGGAGGTGGTAGAATTCTTGTATCACACCAAGGCCAGTGTCAGCTCCCC
ATTCTGAACTTGGAGCTGGATCATAGACAGAATGAATATGTACCTGGGGA
AGGACTCAGTAAGTAGACAGTGAGGAGTAGTTCACTCCCCCTGACCCCCC
AATGCTACCTGGGTAGAAGCATTGTGTGGAGAGGGTTACTCCTCACTGTA
TATGCTGGCTACATACTCTGGGGGAACTTTATGACTCTGAAGAACACTGC
ATCTCTTTGGTGGTTGTCCTTGCCGACTTCTTTCTTTTTTCTAAGATGAT
AAAAATAAATCCTTTTCCTATTTG

Query= MSMg01no335_n09.g1 MSMg01no335_n09.g1 CHROMAT_FILE:
MSMg01no335_n09.g1 PHD_FILE: MSMg01no335_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:44 2005
         (488 letters)



>mm_chr1_195461387_195462273
          Length = 887

 Score =  779 bits (403), Expect = 0.0
 Identities = 455/488 (93%), Gaps = 25/488 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctggagatcaaatattcccagaacccattgtatggaatctctaanacaggcatgaac 60
           ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 atcctggagctcaaatattcccagaacc-attgtatggaatctctaaaacaggcatgaac 259

                                                                       
Query: 61  acacacattcagagtgctgattctgatcttaatggatggtaatctagccttagaggcacc 120
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acacacattcagagcactgattctgatcttaatggatggtaatctagccttagaggcacc 319

                                                                       
Query: 121 tgtctacttatccttgcagggcctgccctcccctgtttgccaggcccacctcaataccat 180
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 320 tgtctacttatccttgcagggcctgccctcccttgtttgtcaggcccacctcaataccat 379

                                                                       
Query: 181 ttctatctatctatctatctatctatctatctatctatctatctatctatctatctatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttctatctatctatctatctatctatctatctatctatctatctatctatctatctatct 439

                                                                       
Query: 241 atctatctatctatctatctatctatctatctatctagactatggtggcctattaactag 300
           |||||||||||||                        ||||||||||| |||||||||||
Sbjct: 440 atctatctatcta------------------------gactatggtggtctattaactag 475

                                                                       
Query: 301 ccttttagtctacactggtcctgcactggaggtggtagaattcttgtatcacaccaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 476 ccttttagtctacactggtcctgcactggaggtggtagaattcttgtatcataccaaggc 535

                                                                       
Query: 361 cagtgtcagctccccattctgaacttggagctggatcatagacagaatgaatatgtacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cagtgtcagctccccattctgaacttggagctggatcatagacagaatgaatatgtacct 595

                                                                       
Query: 421 ggggaaggactcagtaagtagacagtgaggagtagttcactccccctgaccccccaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggggaaggactcagtaagtagacagtgaggagtagttcactccccctgaccccccaatgc 655

                   
Query: 481 tacctggg 488
           ||||||||
Sbjct: 656 tacctggg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space:   419206
Effective search space used:   419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)