Query= MSMg01no336_f16.b1 MSMg01no336_f16.b1 CHROMAT_FILE:
MSMg01no336_f16.b1 PHD_FILE: MSMg01no336_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:24 2005
(469 letters)
>mm_chr1_56201594_56202460
Length = 867
Score = 746 bits (386), Expect = 0.0
Identities = 446/468 (95%), Gaps = 8/468 (1%)
Strand = Plus / Minus
Query: 5 gaattccatgttccattacttacatcagttttaaaaccaatgcattgattaggttgtctt 64
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 667 gaattccatgtcccgttacttacatcagtttttaaaccaatgcattgattaggttgtctt 608
Query: 65 ttgctgtgtctaactctgaaaccataagcatagcatttaactagaaagtagtactgatgc 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 607 ttgctgtgtctaactctgaaaccataagcatagcatttaattagaaagtagtactgatgc 548
Query: 125 atgctattgtaggccaatcttagttggtcgcacacaccacacacacactcacgcaaataa 184
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 547 atgctattgtaggccaatcttagttggtcacacacaccacacacacag----gcaaataa 492
Query: 185 taataaagttctgattgtgagt-agtgtttgttagaagggagagtttatgatggatatga 243
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 491 taataaagttccgattgtgagttagtgtttgttagaagggagagtttatgatggatatga 432
Query: 244 gatgaggtggtgactctgtccagaatatat-tatatacattcatgaaactgttgaagatt 302
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 431 gatgaggtggtgactctgtccagaatttatct-tatacattcatgaaactgttgaagatt 373
Query: 303 aaatgaaattttaaaaagaaaagcacagtgtaaacttactggatcattaaaaaatcattt 362
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 aaatgaaatttaaaaaagaaaagcatagtgtaaacttactggatcattaaaaaatcattc 313
Query: 363 aatatttttt-gacaactcctgtttgacagctacacatatttcctaacacgaggccattt 421
|||||||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct: 312 aatatttttttgacaactcctgtttgacagctacacatattttctaagaggaggccattt 253
Query: 422 ctctttattttgtcaaatgtgtagttattcccatagcactggtgaaga 469
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctctttattttgtcaaatgtgtagttattcccatagcactggtgaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 867
Length adjustment: 10
Effective length of query: 459
Effective length of database: 857
Effective search space: 393363
Effective search space used: 393363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_f16.g1 MSMg01no336_f16.g1 CHROMAT_FILE:
MSMg01no336_f16.g1 PHD_FILE: MSMg01no336_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:24 2005
(495 letters)
>mm_chr1_55975920_55976814
Length = 895
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%)
Strand = Plus / Plus
Query: 1 cagtgattgacacccatgggagacctaagcccattctgagcatgcactatctcgtgactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgattgacacccatgggagacctaagcccattctgagcatgcactatctcgtgactc 260
Query: 61 taactcatgcacacagtgcagggggtctcttgcatctatgtcatgaacacacagagacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactcatgcacacagtgcagggggtctcttgcatctatgtcatgaacacacagagacca 320
Query: 121 ttgcaaaagagaaacatgtcatagcaaggaagatcatgtttgcacttgggtcaggtctac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttgcaaaagagaaacatgtcatagcaaggaagatcatgtttgcacttgggtcaggtttac 380
Query: 181 atacacggtggctggcatgaaatgagagcagctttgcttggttaccgggccatttctaca 240
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atacacggaggctggcatgaaatgagagcagctttgcttggttaccgggccctttctaca 440
Query: 241 ctttaccttgagaccttttctgcctgactccttcattgtgtcccttccctctcccttcat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttacctggagaccttttctgcctgactccttcattgtgtcccttccctctcccttcat 500
Query: 301 accttctcagccactcctctcactcttgtttcagcaccaggagtgggcacccaagctttg 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 accttctcagccactcctctcactcttgtctcagcaccaggagtgggcacccaagctttg 560
Query: 361 gcaagctggatgaggaagagtggttctctcctctctcttacatatgaagtggcttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaagctggatgaggaagagtggttctctcctctctcttacatatgaagtggcttctttt 620
Query: 421 tctgtttatatcttcatgtgaacattctggagggtaagaatgacagattattggctcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtttatatcttcatgtgaacattctggagggtaagaatgacagattattggctcagt 680
Query: 481 cacaatttgccttac 495
|||||||||||||||
Sbjct: 681 cacaatttgccttac 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
