BAC Information

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BAC

Clone NameMSMg01-336F22
Chromosome1 (Build37)
Map Location 5,095,499 - 5,096,011
singlet/doubletsinglet
Overlap geneAtp6v1h
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20
Downstream geneEG636659, Oprk1, Npbwr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336F22.T7 (MSMg01no336_f22.b1)MSMg01-336F22.TJ (MSMg01no336_f22.g1)
ACCAG451405AG451406
length736739
length of high quality
(start - end)		466 (44 - 509)513 (72 - 584)
definitionCHROMAT_FILE: MSMg01no336_f22.b1 PHD_FILE: MSMg01no336_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:25 2005CHROMAT_FILE: MSMg01no336_f22.g1 PHD_FILE: MSMg01no336_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAGATCTGCCTCTGCCTCTCTAGGTGCTAGTATTAGAGGTGTGT
GCCACCATGTCAGGCTTGGATTTATTTTAATCTTGTTGGGAGGAGCATAT
ATATAGATTATCTTTTCTGCATCATTTTATTGGCTTGTTTTTCATTTGGT
GATTATTTTATGTCCTGAAACTCTTTATATATTCTGGATGTGAATTCTTT
ATTAACGACATTGTAATTATCTTGTCTAATTATGTTTTACCTTTTTTTCT
TTTACTGCTTATCTCTGTATGTGTATGTCTGTGCAAGTGCCAAGAGGATA
AAACCAAGTGGCATTTCTCAGGAGCTACCTACCTTGTTTGTTTTTTATTT
TTATTATTATTATTTTTTGACACACTCATTGGTTGAAGATTGGCTGGCTG
GCCAGCCAGCCAGTGAGTCTTAAAGAACTGTCTGCCACAATATCCTCAGA
TGCTGTGACACAAATCTGGCATTATAGTTACCATGCCAAATTTAGGATTA
TTTTTCTTTCTTCTTCTTCCTCTTCTTTCCCCTCCTCCTCCTTTTAAAAG
TTTTCTTTTTGGTTTTTGGTTTAAACCCTTTTTCCAAAGCAAATTCACAT
AAATAATTATTTTAACCTTATGGGAATGGGGGGGTTTCCCCCCCGAATCT
CCGAAAAAAGACAATTCCCGGGTTTTCCCCTCCCCG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATCTCTTTATATGCAGCTCAAGATCAG
TCCAAACCAAATCTACACTAACAGATCATAGTAATCACCTTTGAAGGAGG
TATGGTGAAAAGGCCCTAGTAGAAAAAAAAACAACATGTATAAACTCATC
TCAGGGGAGAAATGGTGGCAATGCCGTTACAGACTACTTACTTAGCAAAC
GTGAGACTCTGCTTTTATCCCCAACACCAGGATGGGGGAGGAAGATAAAT
ACTAGAACAGGAATTAGAAGCTTTATCTTGGTATCTTGAGGAAATCACTT
CATCAAAATTGTGTTATTATCATTAAAGGAAAGTAGTGCCAGCTATATCA
AAATTAAAAATCTATTCACTATAATTAGTTTCTATAAAACATTAAATAAG
TTTAAGGTGTACTATTATTGTCAGTACATATTCACAGACTAAAATGCATA
TAGGCAAGAATTTCTTAAAATAGGGTTAATAAAAATAAACCCCTTAGTCA
ATGTACAAAAACATCAGTATCAGATTTCTAGCCAGGTGGAGGTAGTAGTG
AATGCCTTTAATCCCAGAGCTACNGAGTTCCNAAACAGNCAAGGCTACAC
TGAAAAACTTTTGTCTCGCGNNGAGGAAANNNNNAAANANNANNAANCCC
GGGGCTCCCTATTATTCCCAATTTTAACCCTTCCAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_f22.g1 MSMg01no336_f22.g1 CHROMAT_FILE:
MSMg01no336_f22.g1 PHD_FILE: MSMg01no336_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:25 2005
         (513 letters)



>mm_chr1_5095299_5096211
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctctttatatgcagctcaagatcagtccaaaccaaatctacactaacagatcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agatctctttatatgcagctcaagatcagtccaaaccaaatctacactaacagatcatag 654

                                                                       
Query: 61  taatcacctttgaaggaggtatggtgaaaaggccctagtagaaaaaaaaacaacatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taatcacctttgaaggaggtatggtgaaaaggccctagtagaaaaaaaaacaacatgtat 594

                                                                       
Query: 121 aaactcatctcaggggagaaatggtggcaatgccgttacagactacttacttagcaaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaactcatctcaggggagaaatggtggcaatgccgttacagactacttacttagcaaacg 534

                                                                       
Query: 181 tgagactctgcttttatccccaacaccaggatgggggaggaagataaatactagaacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgagactctgcttttatccccaacaccaggatgggggaggaagataaatactagaacagg 474

                                                                       
Query: 241 aattagaagctttatcttggtatcttgaggaaatcacttcatcaaaattgtgttattatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aattagaagctttatcttggtatcttgaggaaatcacttcatcaaaattgtgttattatc 414

                                                                       
Query: 301 attaaaggaaagtagtgccagctatatcaaaattaaaaatctattcactataattagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attaaaggaaagtagtgccagctatatcaaaattaaaaatctattcactataattagttt 354

                                                                       
Query: 361 ctataaaacattaaataagtttaaggtgtactattattgtcagtacatattcacagacta 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 353 ctataaaacattaaataagtttaaggtatactattattgtcagtacatattcacagacta 294

                                                                       
Query: 421 aaatgcatataggcaagaatttcttaaaatagggttaataaaaataaaccccttagtcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaatgcatataggcaagaatttcttaaaatagggttaataaaaataaaccccttagtcaa 234

                                            
Query: 481 tgtacaaaaacatcagtatcagatttctagcca 513
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgtacaaaaacatcagtatcagatttctagcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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