ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCATTATTATAAATCTCTGTCCTTTGAGTTTTTGCTGGCTGGAGAC
AAGTAACTTTTATCCTCTGCTTCTCATTGTCTTCCTCCTAGCACCTGTTC
AGGTAACCAGCCAGCCTCTTTGCATAGCAAGGGTTCCGAGCATCTCTGAG
CTGAGGCTTTCTTTTTCTGGTGGATGTGTTCTTTTGATCTAGTTTCATGT
GCAGGAACCACATGACTTAGGTTTTCTGCTGGCTGAAAAACCATTTTTCT
TCCCTCCTAAACTATATCCTTAAGTGTGTGTGATCCATTCCTAAATTCTT
TTCAAACATGGGTTCTTGGCCCACATTGGATGCCATGTGTTGCATGAGTT
TTTATCTAGTCCAGACCTGCTTTAAGAAAGTTTTTTAAATAATGTTTCAG
CAAGCCCCTTTTTTCCTTGCAGAGAAATACTTCCAGATTCATCCTCAAAA
CCAAAATCTGCACACCAAAAAATGCTTAAAATTATAACAAACTAGACACT
TTAAAGGCAGTCAAGTGGCCTTTCAACAGTTTACTAGAAAGAATGTAGAG
TCTGAAATCTTTCCACTGTCCTTCCTGGNCATTAGATGAAACTTTTCTAC
TCCGGAATAAATTGAACTGCAAGTAGCAGAATCTTGGTTTTTTTTTTTTT
TTAAAAAGAGAATTTCCCCCCCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGACCTGAGGAATATCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTCAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTATTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGATCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAGCAGAGGAATGGATACAGAAAATATG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
CTAACACATTCACAAAAAAACTCACACCATATGTACTTACTGGAAAATGG
ATATTAGCCCCCAACCTAAGGATACCCCAGGATTTAATAAACAATTTGCT
TAACCACTTGTAACTCCACGAAGATAGAA

Query= MSMg01no336_j08.b1 MSMg01no336_j08.b1 CHROMAT_FILE:
MSMg01no336_j08.b1 PHD_FILE: MSMg01no336_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:40 2005
         (505 letters)



>mm_chr1_124932908_124933812
          Length = 905

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattcattattataaatctctgtcctttgagtttttgctggctggagacaagta 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ggaattcattcaaaattataaatctctgtcctttgagtttttgctggctggagacaagta 646

                                                                       
Query: 64  acttttatcctctgcttctcattgtcttcctcctagcacctgttcaggtaaccagccagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 acttttatcctctgcttctcattgtcttcctcctagcacctgttcaggtaaccagccagc 586

                                                                       
Query: 124 ctctttgcatagcaagggttccgagcatctctgagctgaggctttctttttctggtggat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctctttgcatagcaagggttccgagcatctctgagctgaggctttctttttctggtggat 526

                                                                       
Query: 184 gtgttcttttgatctagtttcatgtgcaggaaccacatgacttaggttttctgctggctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtgttcttttgatctagtttcatgtgcaggaaccacatgacttaggttttctgctggctg 466

                                                                       
Query: 244 aaaaaccatttttcttccctcctaaactatatccttaagtgtgtgtgatccattcctaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaaaaccatttttcttccctcctaaactatatccttaagtgtgtgtgatccattcctaaa 406

                                                                       
Query: 304 ttcttttcaaacatgggttcttggcccacattggatgccatgtgttgcatgagtttttat 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 405 ttcttttcaaacatgggttcttggcccacattggatggcatgtgttgcatgagtttttat 346

                                                                       
Query: 364 ctagtccagacctgctttaagaaagttttttaaataatgtttcagcaagccccttttttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctagtccagacctgctttaagaaagttttttaaataatgtttcagcaagccccttttttc 286

                                                                       
Query: 424 cttgcagagaaatacttccagattcatcctcaaaaccaaaatctgcacaccaaaaaatgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 285 cttgcagagaaatacttccagattcatcctcaaaaccaaaatctgcacaccaataaatgc 226

                                 
Query: 484 ttaaaattataacaaactagac 505
           || |||||||||||||||||||
Sbjct: 225 ttgaaattataacaaactagac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)