BAC Information

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BAC

Clone NameMSMg01-336J17
Chromosome1 (Build37)
Map Location 158,216,045 - 158,384,950
singlet/doubletdoublet
Overlap geneTdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1
Upstream geneXpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik
Downstream geneLOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336J17.T7 (MSMg01no336_j17.b1)MSMg01-336J17.TJ (MSMg01no336_j17.g1)
ACCAG451584AG451585
length739738
length of high quality
(start - end)		553 (43 - 595)535 (69 - 603)
definitionCHROMAT_FILE: MSMg01no336_j17.b1 PHD_FILE: MSMg01no336_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:42 2005CHROMAT_FILE: MSMg01no336_j17.g1 PHD_FILE: MSMg01no336_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,216,045 - 158,216,595)(158,384,413 - 158,384,950)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTC
CTCAATCACCCTCATATTTTATTGAAATTTATCCATCTATGAGTACCTGA
GCCTGGCACATTATGGACTGCTCAAATCTACAGCTAACCACAGTGGCTCC
TAAAGAAACAAGCTCACAAGCACATTAAGATGTAGGCACAAAAATATTAA
TCCTACTTGCCTAGAATGAATGAAGGCTGAAGTTTCATCCCTTAAACAGC
AAGATAAATAAAAAAGTTAAAAATACTAATCACATTGCTTATTATGGTAA
AAATGGAAACAATCTAAATGTCTACCAACAGAACACTGGTTAAATGAAAT
AAATATATAAGAATTGCACAAAGGTAAACATGAAAAAATACTAATATGGA
AAACAAAACATTAAACATAAGAAGCAAAGACATATTTATATAATAATGCT
TTGCATAAGAAGATTATGTTATAATTAAGTATATAATGTGTAAGAGATTG
TGAAATATACTCATTAAAGCTACAAGTATTAACTACCTCTGTGTTGTTTG
AATGGCTTAAAGAGCTTTTGTGGTTAAAAGAAGTTCTATGACGTCAGATA
GGATCTTGCTCAGATCTTCTAAGTCCTGTATTCNAGTATGTGGGGTCTTG
AGCATTAAGGACTTGTCGTGGAGCTCTGTGAGGCAGGCCAACTGTATTGC
TTTGGGCATCTCTTTGCCACCCTAACCAACAAGTGGAGG

ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGAATTGACTCCCTAAAATTGTCTTCACACT
TCTACATTTGTGCTGTGGCACTTATGTGCCCATACAGACAACAATGCATA
AGTAGTGAGTAAATGCAAGATTCCTCCATCTAGTCATTAGGCATCTGAAA
TGAGAAAGAAAGGAATGAAGAAAGGAGTAGTTGAGGTGAGCGTGAACTTT
AGCTCACAGCATGGATTATGTGTGGGACGAGGCTTTAGGGTTGTGAGTCA
TCTTTCCTGCTGTTAAGGGCGGGTAGCCGTCTGAATGGTGGTGTGGGGAC
AGACACACTGTCTCTCAGTTCTTTGATGGTTATTTATGCTCTACTGGGGA
ACAGTGGAAAAGGGCGTTGGAAAGTTGGCCTTCCATTGTACGTTTTTCCT
CTGTTTCATGCCTGTGTGGTGTCTCTCTTTTTACCTGCTTGCTTTCACTT
TATTCCTTCACCAACCAAAACACTGCACCAGATCCTCAAATCCCAGCTCA
TCCCTCTGGCTTCCATTTCCTCCCACCCGTGATCTGAGTACTCCCTGTTC
TGTCCTCCTGAGTTCTTAATCTACAGTTTGGTTGATTGANGAACGTGGAG
AAAACGGAGGGGCTCGAGTGCTCTCTCCTGCACACTGAGGTACATCCCCA
GCTCCTGGGGTTGCTTGCTTAAGGATCTTAAAAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_j17.b1 MSMg01no336_j17.b1 CHROMAT_FILE:
MSMg01no336_j17.b1 PHD_FILE: MSMg01no336_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:42 2005
         (553 letters)



>mm_chr1_158215843_158216795
          Length = 953

 Score = 1027 bits (531), Expect = 0.0
 Identities = 546/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctcaatcaccctcatattttattgaaatttatccatctatgagtacctgagcct 62
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 gaattcctcaatcaacctcatattttattgaaatttatccatctaggagtacctgagcct 262

                                                                       
Query: 63  ggcacattatggactgctcaaatctacagctaaccacagtggctcctaaagaaacaagct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcacattatggactgctcaaatctacagctaaccacagtggctcctaaagaaacaagct 322

                                                                       
Query: 123 cacaagcacattaagatgtaggcacaaaaatattaatcctacttgcctagaatgaatgaa 182
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 cacaagcacattaagatgtaggcacaaaaatattaatcctatttgcctagaatgaatgaa 382

                                                                       
Query: 183 ggctgaagtttcatcccttaaacagcaagataaataaaaaagttaaaaatactaatcaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggctgaagtttcatcccttaaacagcaagataaataaaaaagttaaaaatactaatcaca 442

                                                                       
Query: 243 ttgcttattatggtaaaaatggaaacaatctaaatgtctaccaacagaacactggttaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgcttattatggtaaaaatggaaacaatctaaatgtctaccaacagaacactggttaaa 502

                                                                       
Query: 303 tgaaataaatatataagaattgcacaaaggtaaacatgaaaaaatactaatatggaaaac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaaataaatatataagaattgcacaaaggtaaacatgaaaaaatactaatatggaaaac 562

                                                                       
Query: 363 aaaacattaaacataagaagcaaagacatatttatataataatgctttgcataagaagat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaacattaaacataagaagcaaagacatatttatataataatgctttgcataagaagat 622

                                                                       
Query: 423 tatgttataattaagtatataatgtgtaagagattgtgaaatatactcattaaagctaca 482
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatgttataattaagtatataatttgtaagagattgtgaaatatactcattaaagctaca 682

                                                                       
Query: 483 agtattaactacctctgtgttgtttgaatggcttaaagagcttttgtggttaaaagaagt 542
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtattaactacctctgtgttgtctgaatggcttaaagagcttttgtggttaaaagaagt 742

                      
Query: 543 tctatgacgtc 553
           |||||||||||
Sbjct: 743 tctatgacgtc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_j17.g1 MSMg01no336_j17.g1 CHROMAT_FILE:
MSMg01no336_j17.g1 PHD_FILE: MSMg01no336_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:42 2005
         (535 letters)



>mm_chr1_158384213_158385150
          Length = 938

 Score =  986 bits (510), Expect = 0.0
 Identities = 530/538 (98%), Gaps = 3/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaattgactccctaaaattgtcttcacacttctacatttgtgctgtggcacttatgtg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 738 aggaattgactccctaaaattgtcttcacatttctacatttgtgctgtggcacttatgtg 679

                                                                       
Query: 61  cccatacagacaacaatgcataagtagtgagtaaatgcaagattcctccatctagtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cccatacagacaacaatgcataagtagtgagtaaatgcaagattcctccatctagtcatt 619

                                                                       
Query: 121 aggcatctgaaatgagaaagaaaggaatgaagaaaggagtagtt---gaggtgagcgtga 177
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 618 aggcatctgaaatgagaaagaaaggaatgaagaaaggagtagttgaggaggtgagcgtga 559

                                                                       
Query: 178 actttagctcacagcatggattatgtgtgggacgaggctttagggttgtgagtcatcttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actttagctcacagcatggattatgtgtgggacgaggctttagggttgtgagtcatcttt 499

                                                                       
Query: 238 cctgctgttaagggcgggtagccgtctgaatggtggtgtggggacagacacactgtctct 297
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||
Sbjct: 498 cctgctgttaagggcgggtagccgtctgaatggtggtgccgggacagacacaccgtctct 439

                                                                       
Query: 298 cagttctttgatggttatttatgctctactggggaacagtggaaaagggcgttggaaagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagttctttgatggttatttatgctctactggggaacagtggaaaagggcgttggaaagt 379

                                                                       
Query: 358 tggccttccattgtacgtttttcctctgtttcatgcctgtgtggtgtctctctttttacc 417
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggccttccattgtatgtttttcctctgtttcatgcctgtgtggtgtctctctttttacc 319

                                                                       
Query: 418 tgcttgctttcactttattccttcaccaaccaaaacactgcaccagatcctcaaatccca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcttgctttcactttattccttcaccaaccaaaacactgcaccagatcctcaaatccca 259

                                                                     
Query: 478 gctcatccctctggcttccatttcctcccacccgtgatctgagtactccctgttctgt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctcatccctctggcttccatttcctcccacccgtgatctgagtactccctgttctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 938
Length adjustment: 10
Effective length of query: 525
Effective length of database: 928
Effective search space:   487200
Effective search space used:   487200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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