XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ACTGTGCCTTGTTAGAAAGGGGAAGCCATTTTGTAATTCTAGCCTGGAGA
GGAAGCCAGAAGTGTCACACAGGCAGACACCTGACATTTTGTTCTACACT
CATCAACCTGATTGGGAGCTGGGCAGGATCATCAAACTACAGACACTGGG
TAGGTGGGGCACTTGGTCCTTCACTTGCTTACACGGTCCACAAGAAAACA
TTCCTCCAACAAAGAAACCAGCATACTGTGCATCTTTTAGTCTCTATTCC
TTCCTTCCTTAATGATTTATCTATCTATCTATGTTATGTGCATTAGTGTT
TTGCCTGTGTGTATTTCTTTGTGAAAGTGTGAGATCCCTTAGAACGTGAG
TTACAGACAGTTGTGGATGTGGGTATTGGGAATTGAACCCAGGTCTTCTG
GAAGCATAGTCAGTGCTCTTAACCACAGAGCCATCTCTCCAGCCCCAAAG
TGGTATGTTTCTCAGACTCAAGTCAAGATTGTTTCCTTTTTGTTTTTGGT
TTTGGTTTTTGTTTTGGGTTTTCTTTTTTTGGTTTTTTTTTTTTTTTTGA
GACAGGTTCTCTGGGTAGCCCTGGGTGGCTTGGGAATCACTCTGTAAACA
AGCTGGGCCCCAACCTAAAAAACCACCCGCCCTTGTCTCCCAAGGGGGGG
GTAAAAGGAGGGGGCCCCCTTCCCTCCTGTAATTGTTTTCTACAAAAAAA
CC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGATGAAGGTCAGAGATGTTTTAAGATGTCTTTANTTGA
ATTAAAGAAGGGGAAAGTGTCCAATGACCATGATTGGGTGNAATGATCCC
AGAATCTGNACGNCCTGCTNGTTAACCATTTAAAATCATTTTTGATATTG
ACCGAACAAGATCCTGATCCGGAATGGCTTTTATTATAGCCAAAAAATTG
GGCTAAAAAAGCCTAAAGGGAAAGGGTAAATTCCCCCGGTTCTATTTGAA
CGCGTTTTTAAGGCTTCCTTTATAGGGAAAACAACCCCTTTTTAAAAGGG
GAAAATTTTTTGGAAAAACTCTGTAAACCCCCCCTGGGAACCCCTTTTTA
AAAACACAAAAAAAAAAACCCCCCCCAAAAAAAAAAAACCCAAAAAAGGG
GGGGGAAAACTTCCCCCCACAAATTTTTTCTTCCCCCTTGAAAAAAAAAA
AAAAATAATTTTTTTTTCTTTTTTTTTAAAAAAAAACCCCCCCCCCAACA
ACTTTTTATATGGGCCCCCGCGGCGCGGAATTATAAAAANATCTCCTCCC
CCTCCCCTTTTTTCTTTTTTTTTCNANAATACANANCAAAACNCAAATNA
NCCCNNCGCCCCCCCCCCCCCCACAAAAAAAAACACCCCCCACCGGCGCC
NNNNTTTATTATTCTTCCCCCCCTTTACCACACACATAAACACACAAACA
CCCTCGTCGGGGTCGGGGGGC

Query= MSMg01no336_m19.b1 MSMg01no336_m19.b1 CHROMAT_FILE:
MSMg01no336_m19.b1 PHD_FILE: MSMg01no336_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:58 2005
         (479 letters)



>mm_chr1_12793082_12793960
          Length = 879

 Score =  760 bits (393), Expect = 0.0
 Identities = 466/519 (89%), Gaps = 44/519 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactgtgccttgttagaaaggggaagccattttgtaattctagcctggagagga 64
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctactgtgctttgttagaaaggggaaaccattttgtaattctagcctggagagga 264

                                                                       
Query: 65  agccagaagtgtcacacaggcagacacctgacattttgttctacactcatcaacctgatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccagaagtgtcacacaggcagacacctgacattttgttctacactcatcaacctgatt 324

                                                                       
Query: 125 gggagctgggcaggatcatcaaactacagacactgggtaggtggggcacttggtccttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagctgggcaggatcatcaaactacagacactgggtaggtggggcacttggtccttca 384

                                                                       
Query: 185 cttgcttacacggtccacaagaaaacattcctccaacaaagaaaccagcatactgtgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgcttacacggtccacaagaaaacattcctccaacaaagaaaccagcatactgtgcat 444

                                                                       
Query: 245 cttttagtctctattccttccttccttaat------------------------------ 274
           |||||||| ||||||||||||||||||  |                              
Sbjct: 445 cttttagtttctattccttccttccttccttccttccttccttccttccttccttccttc 504

                                                                       
Query: 275 --------------gatttatctatctatctatgttatgtgcattagtgttttgcctgtg 320
                         |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cttccttccttcctgatttatctatctatctatgttatgtgcattagtgttttgcctgcg 564

                                                                       
Query: 321 tgtatttctttgtgaaagtgtgagatcccttagaacgtgagttacagacagttgtggatg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 tgtatttctttgtgaaagtgtgagatcccttagaacgtgagttacagacagttgtgggtg 624

                                                                       
Query: 381 tgggtattgggaattgaacccaggtcttctggaagcatagtcagtgctcttaaccacaga 440
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 625 tgggtattgggaattgaacccaggtcttctggaagcatagtcagtgctcttaactacagc 684

                                                  
Query: 441 gccatctctccagccccaaagtggtatgtttctcagact 479
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccatctctccagccccaaagtggtatgtttctcagact 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)