BAC Information

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BAC

Clone NameMSMg01-337D09
Chromosome1 (Build37)
Map Location 128,415,895 - 128,587,987
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337D09.T7 (MSMg01no337_d09.b1)MSMg01-337D09.TJ (MSMg01no337_d09.g1)
ACCAG452042AG452043
length743762
length of high quality
(start - end)		524 (67 - 590)366 (74 - 439)
definitionCHROMAT_FILE: MSMg01no337_d09.b1 PHD_FILE: MSMg01no337_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:31 2005CHROMAT_FILE: MSMg01no337_d09.g1 PHD_FILE: MSMg01no337_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,415,895 - 128,416,418)(128,587,622 - 128,587,987)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCTGTTACTAACCTTTAGAGACATGGATGCCAAAACTTCTGCCG
GAAAATATAAACTGACATCACTGTTACAGAGAGCATGGAGGAATATCTGG
GAATATCTGGGAATATCTGGGATGAGGTCATTTTATGTCCGTTTCCATTT
CCTTTGGGAAAGCATACAAATCCAGAGAATGAAAGCAAGTTATGTTAATT
GTAAATACTCTTTTCTTTTAGAGTAGGGATCACAGCTAAACCAAAGAGCA
AAGGAGAACTTCTAGGTTTCAAGAATTTTGTTAAAACTCTTTGATGGCTA
GAAGGGAGGTGCCTCTGGCCTCTTTTTCTAACAGGTTCTGTACATGTTGA
TCAATTAAGTGCTTCAGTCTTTCTGGCAGTGCAGGAACTGTGCCCCACGG
GAAGCAGGAGTTAAGTGCTTTCCCAAGGCAAACAGTTTGTAGTCAATATC
TTATAGATTCTTGGAATTAGGTATCAAGGCTTCGTCTGCCCTTCAGAGAG
GGGAGGGTGGGGAAACAAAATGAAACAAAAATCCCTAGAGTTTCAGTCTG
AGGACATGGCTCATTCAATGAACTACTTCCCATGCAAGCATGAGAACCTG
AGCCTGGATCAGCAGAAACTATGATAAGAAGCCAGGGATGGTGGCTTGCA
TCTGTAAATTCAGCACTATGGAATTGCAGACCAGTGCATTCCG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACAGCTTTGTGTGTGACTTAACTCCC
CCGAGGCCTTAGGACTTGGGAGTGTTGGAGCTGAAACTTCATCTTTGGGT
CTGGCTTTGTATATCTTGAAGCTCTGAAGTAGAAACTTCTGTGACAGCCA
CGGGGAGTCTACATATGCTGCTTCCATGCCCGTTCTGACAGAAAGGCCCC
CAGCTGTTCTGACAGAACTAGAAACTTCCATGGATACTACGACACCTACC
ATACCTGCACCCAGTGATGAGGGAGGCAGGCTTGGTTTCAGCAAGAACAA
TTGACCAGGCGTGGGGTTGGAAGGGAGAGACCCCCAGGACTGGTGTTGGG
GGGGAGGGGCTCCCAGGAGTGGTGTTGGGAGGAAGGGGTTCNTTATGAAT
ATGGGACTTGACTACTGTATGGTGAATCTAGACCTGCTTTCTGATCTTTG
CGTTTACTACTATTATTATTATTACTACTATTACTATTATTTCATACTCT
TATTTAATCCCCTTTCCTTTAAATTTATTTGTCACGCTTTATCCGTCCCT
TTATTGAATATTATTGTTCTTTTTATTTATTTTTTATTCTTCCCTTCTTG
TTTTCTTTCTTCCCTCCTTTTACCTTCTCCCACCCCTTCTGTCTTCATTT
CCCTCACTATATCTCCCCATCCCCCTTTTTTCCGCCTTTTTTCTTATTTT
TATCCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_d09.b1 MSMg01no337_d09.b1 CHROMAT_FILE:
MSMg01no337_d09.b1 PHD_FILE: MSMg01no337_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:31 2005
         (524 letters)



>mm_chr1_128415695_128416618
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctttagagacatggatgccaaaacttctgccggaaaatataaactgacatcactgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctttagagacatggatgccaaaacttctgccggaaaatataaactgacatcactgtta 260

                                                                       
Query: 61  cagagagcatggaggaatatctgggaatatctgggaatatctgggatgaggtcattttat 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cagagagcatggaggaatatctgggaatatctgggaatgtctgggatgaggtcattttat 320

                                                                       
Query: 121 gtccgtttccatttcctttgggaaagcatacaaatccagagaatgaaagcaagttatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccgtttccatttcctttgggaaagcatacaaatccagagaatgaaagcaagttatgtt 380

                                                                       
Query: 181 aattgtaaatactcttttcttttagagtagggatcacagctaaaccaaagagcaaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgtaaatactcttttcttttagagtagggatcacagctaaaccaaagagcaaaggag 440

                                                                       
Query: 241 aacttctaggtttcaagaattttgttaaaactctttgatggctagaagggaggtgcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 aacttctaggtttcaagaattttgttaaaactctttgatggctagaagggaggtgcctcc 500

                                                                       
Query: 301 ggcctctttttctaacaggttctgtacatgttgatcaattaagtgcttcagtctttctgg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctctttttctaacaggttctgtaaatgttgatcaattaagtgcttcagtctttctgg 560

                                                                       
Query: 361 cagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcccaaggcaaacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcccaaggcaaacagt 620

                                                                       
Query: 421 ttgtagtcaatatcttatagattcttggaattaggtatcaaggcttcgtctgcccttcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ttgtagtcaatatcttatagattcttggaattaggtatcaaggcttcctctgcccttcag 680

                                                       
Query: 481 agaggggagggtggggaaacaaaatgaaacaaaaatccctagag 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaggggagggtggggaaacaaaatgaaacaaaaatccctagag 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_d09.g1 MSMg01no337_d09.g1 CHROMAT_FILE:
MSMg01no337_d09.g1 PHD_FILE: MSMg01no337_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:31 2005
         (366 letters)



>mm_chr1_128587422_128588187
          Length = 766

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagctttgtgtgtgacttaactcccccgaggccttaggacttgggagtgttggagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacagctttgtgtgtgacttaactcccccgaggccttaggacttgggagtgttggagctg 507

                                                                       
Query: 61  aaacttcatctttgggtctggctttgtatatcttgaagctctgaagtagaaacttctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaacttcatctttgggtctggctttgtatatcttgaagctctgaagtagaaacttctgtg 447

                                                                       
Query: 121 acagccacggggagtctacatatgctgcttccatgcccgttctgacagaaaggcccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acagccacggggagtctacatatgctgcttccatgcccgttctgacagaaaggcccccag 387

                                                                       
Query: 181 ctgttctgacagaactagaaacttccatggatactacgacacctaccatacctgcaccca 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 ctgttctgacagaactagaaacttccatggatactacaacacctaccatacctgcaccca 327

                                                                       
Query: 241 gtgatgagggaggcaggcttggtttcagcaagaacaattgaccaggcgtggggttggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgatgagggaggcaggcttggtttcagcaagaacaattgaccaggcgtggggttggaag 267

                                                                       
Query: 301 ggagagacccccaggactggtgttgggggggaggggctcccaggagtggtgttgggagga 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 266 ggagagacccccaggactggtgttgggggtgaggggctcccaggagtggtgttgggaggg 207

                 
Query: 361 aggggt 366
           ||||||
Sbjct: 206 aggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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