XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CATGCTTTTATTGTAATAATTACAAGAGCTGTATAGTGTCAAACCCTTTT
CAGGGACCTGGAGAGATCGATATCTCAGTGGATAAAGGGCATGGTGTGAA
AACACCAGGACTCCAAGCCCCTGTAACCTTTGAAAAGGTCTTGCATTTGG
GAGCTAGCTACTTGTTCAAAGACTGGAATTTGTCTTGTATGGGTTTAGAT
TCAGATGAAACATCTTTGACAGAAATGGTGATTTTAATCCTAATCTTTGT
GTAGGGATTTCTGAGTGTGGATGTTTATAGATGAACAGAACAATCATCTT
GATCCTTCCACATTGTCGAGCTTCCTAAGATTTCAGAATAAGATTTTAAA
TGCTTTTATATAATGGTAATTACAAAAGACACAAGAAAAAACCTTGAGGT
ATATAAAAGCATGTATTTTGTTATTATATTATCCCCAGCAGAAAATTGTA
GTGAAGCTAGCACAGTGGCAATGGTGGCATCAGTAGAACAACAACTACAC
ACCTGTCCTCACCTCTAATGTGATTTTTTTTTTCCCTTTTCCATGCTGAG
CAATCAAACTTGTGTGCTAAGAACATGCTCTGTTGCTAAGCATGGACCAT
GACTACATTAATTTTACTGCTTTATCTCAGATGGAGAGGAGAAGACCTAT
GGTGGCTGTGAAGGCCCTGATGCTATGTATGTGAAAATAATATCTTCTGA
TGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGAAC
ACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAA
AGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACATGTAG
AAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATG
AACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAAC
CCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAA
CCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATC
TCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAAAAATCAAAGAAAA
TAGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACA
CAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGAT
TTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAA
CTTCCCAATCTAAAGAAAGAGATGCCCATGAACATACNAGAAAGCTACAG
AACTCCCAATAAACTGGACCAAAAAAGAAATTCCTCCCGAACTTAATAAT
CGAACACCAATGCCCCTATTAAGAAAGAAAACTAAAGCCGAAGGGGAAAG
GTC

Query= MSMg01no337_e18.b1 MSMg01no337_e18.b1 CHROMAT_FILE:
MSMg01no337_e18.b1 PHD_FILE: MSMg01no337_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:38 2005
         (641 letters)



>mm_chr1_16636120_16637160
          Length = 1041

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatgcttttattgtaataattacaagagctgtatagtgtcaaacccttttcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattcccatgcttttattgtaataattacaagagctgtatagtgtcaaacccttttcag 571

                                                                       
Query: 65  ggacctggagagatcgatatctcagtggataaagggcatggtgtgaaaacaccaggactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggacctggagagatcgatatctcagtggataaagggcatggtgtgaaaacaccaggactc 511

                                                                       
Query: 125 caagcccctgtaacctttgaaaaggtcttgcatttgggagctagctacttgttcaaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 caagcccctgtaacctttgaaaaggtcttgcatttgggagctagctacttgttcaaagac 451

                                                                       
Query: 185 tggaatttgtcttgtatgggtttagattcagatgaaacatctttgacagaaatggtgatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggaatttgtcttgtatgggtttagattcagatgaaacatctttgacagaaatggtgatt 391

                                                                       
Query: 245 ttaatcctaatctttgtgtagggatttctgagtgtggatgtttatagatgaacagaacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttaatcctaatctttgtgtagggatttctgagtgtggatgtttatagatgaacagaacaa 331

                                                                       
Query: 305 tcatcttgatccttccacattgtcgagcttcctaagatttcagaataagattttaaatgc 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcatcttgattcttccacattgtcgagcttcctaagatttcagaataagattttaaatgc 271

                                                                       
Query: 365 ttttatataatggtaattacaaaagacacaagaaaaaaccttgaggtatataaaagcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttttatataatggtaattacaaaagacacaagaaaaaaccttgaggtatataaaagcatg 211

                 
Query: 425 tatttt 430
           ||||||
Sbjct: 210 tatttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)